View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_34 (Length: 407)
Name: NF8548A_low_34
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_34 |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 4 - 407
Target Start/End: Original strand, 40924159 - 40924581
Alignment:
| Q |
4 |
atgaaaacaagtgaagcataaaacacaaacgcctgtgaatgaagtgaatctagtatggaaaatgagaattggtatcatactttgtaatcttcatctaaga |
103 |
Q |
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| T |
40924159 |
atgaaaacaagtgaagcataaaacacaaacgccagtgaatgaagcgaatctagtatggaaaatgagaattggtatcatactttgtgatcttcatctaaga |
40924258 |
T |
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| Q |
104 |
aactaacaaatccttcacagttgttgtaggttacgttgaccaatgggcaatgacgatggcagagctgaggggccattgagaatgttcaaggctgaatgaa |
203 |
Q |
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| T |
40924259 |
aactaacaaatccttcacagttgttgtaggttacgttgac-------caatgaccatggcagagctgaggggccattgagaatgttcaaggctgaatgaa |
40924351 |
T |
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| Q |
204 |
aaagagttagaagaagattgtcccatatagtatcgatgtatc------------cttgttaactaacaccgagcatgctaatataaatttttgtcaatca |
291 |
Q |
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| T |
40924352 |
aaagagttagaagaagattgtcccatatagtatcgatgtatccctcaaatattacttgttaactaacaccgagcatgctaatataaatttttgtcaatca |
40924451 |
T |
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| Q |
292 |
actcaaaatctaacatagatcc--------------gcagtgtttaaaaaccggttaataacaatgattaaactaaatactaagtaattatcagaacttc |
377 |
Q |
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| T |
40924452 |
actcaaaatctaacatagatccgcagtcacatatttgcagtgtttaagaaccagttaataacaatggttaaactaaatactaagtaattatcagaacttc |
40924551 |
T |
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| Q |
378 |
aacaaaattaacagaaatattaactgaagt |
407 |
Q |
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| T |
40924552 |
aacaaaattaacagaaatattaactgaagt |
40924581 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 371 - 407
Target Start/End: Original strand, 34990691 - 34990727
Alignment:
| Q |
371 |
gaacttcaacaaaattaacagaaatattaactgaagt |
407 |
Q |
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| T |
34990691 |
gaacttcaacaaaattaacagaaatattaactgaagt |
34990727 |
T |
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