View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_343 (Length: 208)
Name: NF8548A_low_343
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_343 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 2727492 - 2727699
Alignment:
| Q |
1 |
acactaatctaataagtgcttaattaacctttttattcaaacaaatcataacaactaactcattacttagagaataatttttatgtactatcagtgtaaa |
100 |
Q |
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| T |
2727492 |
acactaatctaataagtgcttaattaacctttttattcaaacaaatcataacaactaactcattacttagagaataatttttatgtactatcagtgtaaa |
2727591 |
T |
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| Q |
101 |
actttctatagcgtcaaccgatcacaaaccatcacatttgtctgacttttaatttgatataatggaagtcaaacttttacatgatcgaacaattatgatc |
200 |
Q |
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| T |
2727592 |
actttctatagcgtcaaccgatcacaaaccatcacatttgtctgacttttaatttgatataatggaagtcaaacttttacatgatcgaacaattatgatc |
2727691 |
T |
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| Q |
201 |
gactgaca |
208 |
Q |
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| T |
2727692 |
gactgaca |
2727699 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 40263923 - 40264014
Alignment:
| Q |
116 |
aaccgatcacaaaccatcacatttgtctgactttt-aatttgatataatggaagtcaaacttttacatgatcgaacaattatgatcgactgaca |
208 |
Q |
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| T |
40263923 |
aaccgatcacaatccatca--tttgtaagactttttaattagatatgatgaaagtcaaactttttagtgatcgaacagttatgattgactgaca |
40264014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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