View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_344 (Length: 207)
Name: NF8548A_low_344
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_344 |
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Alignment Details
Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 32265878 - 32265956
Alignment:
| Q |
25 |
ctccaagaatatgtgatcttttatgtcctcctaatgcttgtcctgacctgaaaattttataacaaattggacattcata |
103 |
Q |
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| T |
32265878 |
ctccaacaaaatgtgatcttttatgtcctcctaatgcttgtcctgacctgaaaattttgtagcaaattggacattcata |
32265956 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 19300405 - 19300482
Alignment:
| Q |
25 |
ctccaagaatatgtgatcttttatgtcctcctaatgcttgtcctgacctgaaaattttataacaaattggacattcat |
102 |
Q |
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| T |
19300405 |
ctccaataaaatgggatcttttgtgaccccctaaagcttgtcctgacttgaaaatcttgttgcaaattggacattcat |
19300482 |
T |
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