View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_346 (Length: 207)
Name: NF8548A_low_346
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_346 |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 1411136 - 1410969
Alignment:
| Q |
8 |
atgagatggacatcagaagctcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtgaatgttgcatatacagttccagtat |
107 |
Q |
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| T |
1411136 |
atgagacggccatcagaagctcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtaaatgttgcatatacagttccggtat |
1411037 |
T |
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| Q |
108 |
ccgaatttgaatcaccaaagttataaattgcagggtacacacatttgctagagttactattgccattc |
175 |
Q |
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| T |
1411036 |
ccgaatttgaatcaccaaagttataaattgcagggtacacacatttgctagagttactattgccattc |
1410969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 1414512 - 1414366
Alignment:
| Q |
8 |
atgagatggacatcagaagctcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtgaatgttgcatatacagttccagtat |
107 |
Q |
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| T |
1414512 |
atgagacggccatcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtat |
1414413 |
T |
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| Q |
108 |
ccgaatttgaatcaccaaagttataaattgcagggtacacacatttg |
154 |
Q |
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| T |
1414412 |
ctgaatttgagtcaccaaagttataaattgcagggtacacacatttg |
1414366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 1420058 - 1419917
Alignment:
| Q |
8 |
atgagatggacatcagaagctcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtgaatgttgcatatacagttccagtat |
107 |
Q |
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| T |
1420058 |
atgagacggccatcagaagctctccctgatatgtttccaaag---cttatgccattaggaggttgattacataagaaagttgcatatgcagttccagtat |
1419962 |
T |
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| Q |
108 |
ccgaatttgaatcaccaaagttataaattgcagggtacacacatt |
152 |
Q |
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| T |
1419961 |
ctgaatttgagtcaccaaagttataaattgcagggtacacacatt |
1419917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 1408244 - 1408109
Alignment:
| Q |
18 |
catcagaagctcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtgaatgttgcatatacagttccagtatccgaatttga |
117 |
Q |
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| T |
1408244 |
catcagaagctcttcctgtggtgcttccaaagtagcttataccattaggaggcgtaacagctgtgtatattgcatttgctgctccagtatctgaatttga |
1408145 |
T |
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| Q |
118 |
atcaccaaagttataaattgcagggtacacacattt |
153 |
Q |
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| T |
1408144 |
gtcaccaaaattgtaaattgcagggtactcacattt |
1408109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 3600632 - 3600507
Alignment:
| Q |
28 |
tcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtgaatgttgcatatacagttccagtatccgaatttgaatcaccaaag |
127 |
Q |
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||||||||| ||| |||||||||||||||| || |||||| | |||| ||| | |||||||||| ||| ||||||||| ||||| || ||||||||| |
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| T |
3600632 |
tcttcctgagatgcttccaaagaagcttataccattaggatgctcaacagctgccattgttgcatatccagctccagtatctgaattggagtcaccaaag |
3600533 |
T |
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| Q |
128 |
ttataaattgcagggtacacacattt |
153 |
Q |
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| T |
3600532 |
ttgtatattgctgggtagacacattt |
3600507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 14339499 - 14339374
Alignment:
| Q |
28 |
tcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtgaatgttgcatatacagttccagtatccgaatttgaatcaccaaag |
127 |
Q |
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| T |
14339499 |
tcttcctgagatgcttccaaagaagcttataccattaggatactcaacagctgccgttgttgcatatccagctccagtatctgaattggagtcaccaaag |
14339400 |
T |
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| Q |
128 |
ttataaattgcagggtacacacattt |
153 |
Q |
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|| || ||||| ||||| |||||||| |
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| T |
14339399 |
ttgtatattgctgggtagacacattt |
14339374 |
T |
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