View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_347 (Length: 207)
Name: NF8548A_low_347
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_347 |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 30810322 - 30810500
Alignment:
| Q |
17 |
cacaatctcccctcacattaaatgtgtatgtctacccctcttcatctactatattatata--aatacatagttaccttcaaatttcttttacactataaa |
114 |
Q |
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| T |
30810322 |
cacaatctcccctcacattaaatgtgtatgtctacctctcttcatctactatattatatataaatacaaagttaccttcaaatttcttttacactataaa |
30810421 |
T |
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| Q |
115 |
aactct--tcaacatttatttacttattctatcttcaatattcattagtccttcttttaacaaatgattatagtataat |
191 |
Q |
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| T |
30810422 |
aactctattcaacatttatttacttattctatcttcaatattgattagtccttcttttaacaaatgattataatataat |
30810500 |
T |
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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 30820124 - 30820180
Alignment:
| Q |
135 |
cttattctatcttcaatattcattagtccttcttttaacaaatgattatagtataat |
191 |
Q |
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| T |
30820124 |
cttattcgaacttcaatattgattggtccttcttttaacaaatgactataatataat |
30820180 |
T |
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