View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_35 (Length: 401)
Name: NF8548A_low_35
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_35 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 14877692 - 14878081
Alignment:
| Q |
1 |
tggtgttgctttgatcaaggtaatttttcttttgcaacatctagtagtgtgtatacatataatcacaccaaacataaccctattcgatacaaagcaaatt |
100 |
Q |
| |
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|||||||||||| ||||||||| |||||||| ||||||||||| |||| || | ||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
14877692 |
tggtgttgctttaatcaaggtattttttcttgcgcaacatctag--gtgtatacatatataatcacaccaaacataaccct---cgataaaaagcaaatt |
14877786 |
T |
|
| Q |
101 |
caacaaaaacatttttaaaggactacaacgaagatttaataatgccaaatttgtgatcacccttactgggctggttaatgttgttcttaagaacactatc |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
14877787 |
caacaaaaacatatttaaaggactacaacgaagatttaataatgccaaatttgtgatcacccttagtaggctggttaatgttgttcttaagaacactatc |
14877886 |
T |
|
| Q |
201 |
caactctttaaccaacctctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctctcctttatcatttgtaaaaggaatatgaaagaca |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14877887 |
caactctttaaccaacctctccatgacttgagttggcaaaaaaactggtataaccaaacctttctctcctttatcatttgtaaatggaatatgaaagaca |
14877986 |
T |
|
| Q |
301 |
gcttgaccaggaagagcaccatcccctcctttagctggtcctccataagcagctttcccccaaccaaaatcaatgtctcgaaatccagctcgtgt |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14877987 |
gcttgaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttcccccaaccaaaatcaacatctcgaaatccagctcgtgt |
14878081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 202 - 395
Target Start/End: Complemental strand, 14759852 - 14759659
Alignment:
| Q |
202 |
aactctttaaccaacctctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctctcctttatcatttgtaaaaggaatatgaaagacag |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| ||||| | ||||| |||||||| |||| |
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| T |
14759852 |
aactctttaaccaacctctccatgacttgagcaggcaagaaaaacggtataaccaaaccttcttctcctttagcatttttgaaaggtatatgaaatacag |
14759753 |
T |
|
| Q |
302 |
cttgaccaggaagagcaccatcccctcctttagctggtcctccataagcagctttcccccaaccaaaatcaatgtctcgaaatccagctcgtgt |
395 |
Q |
| |
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|||||||||||| |||| |||| ||||||||||| ||||||||| |||||||||||||||||| |||| |||| || |||||| ||||| |
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| T |
14759752 |
cttgaccaggaatagcaacatcacctcctttagccattcctccatagagagctttcccccaaccaaattcaacatctccaagtccagcacgtgt |
14759659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 172 - 373
Target Start/End: Original strand, 14766920 - 14767121
Alignment:
| Q |
172 |
tggttaatgttgttcttaagaacactatccaactctttaaccaacctctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctctcctt |
271 |
Q |
| |
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||||| |||||||||||||| |||||||| ||||||||||| ||| |||||||| |||||| ||| ||||||||||||||||| |||||||| |
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| T |
14766920 |
tggttgatgttgttcttaagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttcctctcctt |
14767019 |
T |
|
| Q |
272 |
tatcatttgtaaaaggaatatgaaagacagcttgaccaggaagagcaccatcccctcctttagctggtcctccataagcagctttcccccaaccaaaatc |
371 |
Q |
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|| ||||| | ||||| |||| |||| ||| |||||| | ||||||| | ||||||||||||||||| ||||| ||||||| ||||||||||| || |
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| T |
14767020 |
tagcatttttgaaaggtatataaaagctagcaacaccaggtatagcaccaactcctcctttagctggtccaccatatacagcttttccccaaccaaattc |
14767119 |
T |
|
| Q |
372 |
aa |
373 |
Q |
| |
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|| |
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|
| T |
14767120 |
aa |
14767121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 112 - 373
Target Start/End: Original strand, 14785943 - 14786204
Alignment:
| Q |
112 |
tttttaaaggactacaacgaagatttaataatgccaaatttgtgatcacccttactgggctggttaatgttgttcttaagaacactatccaactctttaa |
211 |
Q |
| |
|
||||||||||||||||| ||||| ||| || || |||| | ||||| |||| | |||| |||| |||| ||||||| |||||||||| ||||||| |
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| T |
14785943 |
tttttaaaggactacaatgaagaaacaatgataccggattttttatcacacttagtaggcttgttagtgttactcttaagcacactatccatttctttaa |
14786042 |
T |
|
| Q |
212 |
ccaacctctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctctcctttatcatttgtaaaaggaatatgaaagacagcttgaccagg |
311 |
Q |
| |
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| |||||||||||||||||| |||| ||||||||||||||||| |||||||||| ||||| | ||||| ||||||||| ||| ||||||| |
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| T |
14786043 |
caaacctctccatgacttgatttggaaaataaaatggtataaccaaaccttcctctcctttagcatttttgaaaggtatatgaaagctagcaagaccagg |
14786142 |
T |
|
| Q |
312 |
aagagcaccatcccctcctttagctggtcctccataagcagctttcccccaaccaaaatcaa |
373 |
Q |
| |
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|| | ||||||| ||||| |||||||||||||||| | ||||||||||||| |||||| |
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| T |
14786143 |
aatatcaccatctgctcctctagctggtcctccatagatgggtttcccccaaccataatcaa |
14786204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 262
Target Start/End: Original strand, 14873127 - 14873217
Alignment:
| Q |
172 |
tggttaatgttgttcttaagaacactatccaactctttaaccaacctctccatgacttgagttggcnnnnnnnctggtataaccaaacctt |
262 |
Q |
| |
|
|||||||| ||||||||||| |||| |||||||||||||| |||||||||||| ||| ||||||| |||||||||||||||||| |
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| T |
14873127 |
tggttaattttgttcttaagcacaccatccaactctttaatgaacctctccatggctttagttggcaaacaaactggtataaccaaacctt |
14873217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 373
Target Start/End: Original strand, 14873265 - 14873313
Alignment:
| Q |
325 |
cctcctttagctggtcctccataagcagctttcccccaaccaaaatcaa |
373 |
Q |
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|||||||||||||||||||||||| || ||| |||||||| ||||||| |
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| T |
14873265 |
cctcctttagctggtcctccataacaaggttttccccaaccgaaatcaa |
14873313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 118 - 395
Target Start/End: Original strand, 83864 - 84141
Alignment:
| Q |
118 |
aaggactacaacgaagatttaataatgccaaatttgtgatcacccttactgggctggttaatgttgttcttaagaacactatccaactctttaaccaacc |
217 |
Q |
| |
|
||||||||||||||||| ||||| || ||| |||| ||||||| || | ||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
83864 |
aaggactacaacgaagaattaatgattccagattttctatcacccatagtaggcgagttaatgttgttcttaagaactttatccaactctttaaccaacc |
83963 |
T |
|
| Q |
218 |
tctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctctcctttatcatttgtaaaaggaatatgaaagacagcttgaccaggaagagc |
317 |
Q |
| |
|
|||| |||||||||||||| |||||||||| ||||||| |||||||||| ||||| ||||||| |||| || | || ||||||| || |
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|
| T |
83964 |
tctcgatgacttgagttggaaaaaaaactggtataacaaaaccttcctctcctttagcatttttaaaaggtatataaatggtagaaataccaggattagt |
84063 |
T |
|
| Q |
318 |
accatcccctcctttagctggtcctccataagcagctttcccccaaccaaaatcaatgtctcgaaatccagctcgtgt |
395 |
Q |
| |
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|||||| ||| || ||||| |||||||||| |||||||||||||||||||||||| |||| ||||||||| ||||| |
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| T |
84064 |
accatctcctgctctagctaatcctccataaacagctttcccccaaccaaaatcaacatctctaaatccagcacgtgt |
84141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 395
Target Start/End: Original strand, 11999596 - 11999733
Alignment:
| Q |
258 |
acctttctctcctttatcatttgtaaaaggaatatgaaagacagcttgaccaggaagagcaccatcccctcctttagctggtcctccataagcagctttc |
357 |
Q |
| |
|
||||| |||||||||| ||||| |||||| ||| ||||| ||| |||| ||| |||||| || ||||||||||||||||||||||| ||| |||| |
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|
| T |
11999596 |
accttcctctcctttaacatttttaaaagctatacgaaagcaagcaagaccgggattagcaccgtctcctcctttagctggtcctccatacacaggtttc |
11999695 |
T |
|
| Q |
358 |
ccccaaccaaaatcaatgtctcgaaatccagctcgtgt |
395 |
Q |
| |
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||||||||||| |||| |||| ||||||||| ||||| |
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|
| T |
11999696 |
ccccaaccaaactcaacatctctaaatccagcacgtgt |
11999733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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