View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_350 (Length: 205)
Name: NF8548A_low_350
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_350 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0057 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 46844716 - 46844531
Alignment:
| Q |
20 |
tccaacaatatcctctggtcacggcattcatggctgcaaaatgccatctcacccctgcaatgcaataatgcaactaggttcaagatctcatggtattcac |
119 |
Q |
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| T |
46844716 |
tccaacaacatcctctggtcacggcattcatggctgcaaaatgccatctcacccctgcaatgcaataatgcaactaggttcaagatctcatggtattcac |
46844617 |
T |
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| Q |
120 |
tatcattccttcaaggaatcgttctaattctaatcggacacaaattagcaaatcatactttcctttgatgtaataagacagacacg |
205 |
Q |
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| T |
46844616 |
tatcattccttcaaggaatcggtctaattctaatcggacacaaattagcaaattatactttcctttgatgtaataagacagacacg |
46844531 |
T |
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Target: scaffold0057 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 48932 - 48986
Alignment:
| Q |
20 |
tccaacaatatcctctggtcacggcattcatggctgcaaaatgccatctcacccc |
74 |
Q |
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| T |
48932 |
tccaacagtttcctctggttacggcattcagggttgcaaaatgccatctcacccc |
48986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 28043 - 28099
Alignment:
| Q |
20 |
tccaacaatatcctctggtcacggcattcatggctgcaaaatgccatctcacccctg |
76 |
Q |
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| T |
28043 |
tccaacagtttcctctggttacgacattcaaggttgcaaaatgccatctcacgcctg |
28099 |
T |
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