View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_351 (Length: 205)
Name: NF8548A_low_351
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_351 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 33026400 - 33026196
Alignment:
| Q |
1 |
gtcaatctcgaacacaggtctcttctgattcacaatcttttgattctcaaactgtttatgcatgacagatggaaatgttcttgaaggggattgttctaat |
100 |
Q |
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| T |
33026400 |
gtcaatctcgaacacaggtctcttctgattcacaatcttttgattctcagactgtttttgcatgacagatggaaatgttcttgaaggggattgttctaat |
33026301 |
T |
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| Q |
101 |
cccatcaactttgcaacaagattggtacttttttccttccttggaaaagtcggtgaacacgaagaatcagaaagtttgtcataccaaacaacagatgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33026300 |
cccatcaactttgcaacaagattggtacttttttccttccttggaaaagtcggtgaacacgaagaatcagaaagtttgtcataccaaacaacagatgatt |
33026201 |
T |
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| Q |
201 |
ggctt |
205 |
Q |
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||||| |
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| T |
33026200 |
ggctt |
33026196 |
T |
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