View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8548A_low_36 (Length: 398)
Name: NF8548A_low_36
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_36 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 4968758 - 4969162
Alignment:
| Q |
1 |
agagatgattgagagagagaaa-gaaatatatatcattctgacggtgtaacataacatcattcatccgacgattcaaataacttgtccgtcgtgagagac |
99 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
4968758 |
agagatgattgagagagagaaaagaaatatatatcattctgatggtgtaacataacatcatttatcggacgattcaaataacttgtccatcgtgagagac |
4968857 |
T |
|
| Q |
100 |
ttgcttcacttgcccaccctagcatccgcgccaagttcactttgttttgaaacataacttctttc----------aattctttgtaatttcaattcctca |
189 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4968858 |
ttgcttcacttgcccaccctagcatcggcgccaagttcactttgttttgaaacataacttctttcggttcagttcaattctttgtaatttcaattcctca |
4968957 |
T |
|
| Q |
190 |
tgtttaacatccaaatcgttgaacatttctttaaaccaaaacattttccaaaactatcaatacataccatcacacacataaggtttttcagattatc--a |
287 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
4968958 |
tatttaacatccaaatcgttgaacatttctttaaaccaaaacattttccaaaactatcaatacacaccatcacacacataaggtttttcagattatcaga |
4969057 |
T |
|
| Q |
288 |
taacttgtcttgtctaagattcaatattcgtaatgattaaataatcttttgatgttggtttggtgcacttcacaattaaccaatttttcgagatcaaaga |
387 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4969058 |
taacttgtcttgtctaagattcaatattcacaatgattaaataatcttttgatgttggtttggtgcacttcacaattaaccaatttttcgagatcaaaga |
4969157 |
T |
|
| Q |
388 |
acaac |
392 |
Q |
| |
|
||||| |
|
|
| T |
4969158 |
acaac |
4969162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University