View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8548A_low_37 (Length: 396)

Name: NF8548A_low_37
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8548A_low_37
NF8548A_low_37
[»] chr8 (14 HSPs)
chr8 (9-316)||(4876377-4876684)
chr8 (81-297)||(4926332-4926546)
chr8 (115-286)||(10445377-10445547)
chr8 (128-230)||(4777665-4777767)
chr8 (128-271)||(4680191-4680342)
chr8 (115-232)||(4713705-4713821)
chr8 (115-248)||(4725135-4725270)
chr8 (129-255)||(4687842-4687968)
chr8 (115-219)||(4744634-4744740)
chr8 (129-232)||(4702370-4702473)
chr8 (128-174)||(21440707-21440753)
chr8 (115-171)||(4735680-4735735)
chr8 (129-204)||(4906199-4906274)
chr8 (128-185)||(4914678-4914735)


Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 316
Target Start/End: Original strand, 4876377 - 4876684
Alignment:
Q  9 aatgaatcctgacaagagatatatgtagcaacaaagaaaacttcagctataacaatattaagtagtaacaactaacaactatatgtgtgacattaagcga 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4876377 aatgaatcctgacaagagatatatgtagcaacaaagaaaacttcagctataacaatattaagtagtaacaactaacaactatatatgtgacattaagcga 4876476  T
Q  109 cattatacaaattaataacacaaacctgattgatcctgagcttgtatcaaaactaaaatagtaagggcaccaagcaacactaaaacaaaatgcaataaga 208  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4876477 cattatacaaattaataacccaaacctgattgatcctgagcttgtatcaaaactaaaatagtaagggcaccaagcaacactaaaacaaaatgcaaaaaga 4876576  T
Q  209 tttccatcattgtttgcttcattaggaatataattaatgaatgatgagtgttaatgctatacaacgcagcatttataccgctagagagtcaaatttgctt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4876577 tttccatcattgtttgcttcattaggaatataattaatgaatgatcagtgttaatgctatacaacgcagcatttataccgctagagagtcaaatttgctt 4876676  T
Q  309 caatttac 316  Q
    ||||||||    
T  4876677 caatttac 4876684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 81 - 297
Target Start/End: Original strand, 4926332 - 4926546
Alignment:
Q  81 taacaactatatgtgtgacattaagcgacattatacaaattaataacacaaacctgattgatcctgagcttgtatcaaaactaaaatagtaagggcacca 180  Q
    ||||||||| || |||||||| |||| ||  |||||||||||||||| ||| ||||||||||||||||||||||||||||| ||| |||||||  |||||    
T  4926332 taacaactagatatgtgacataaagcaactatatacaaattaataacccaa-cctgattgatcctgagcttgtatcaaaaccaaa-tagtaagaacacca 4926429  T
Q  181 agcaacactaaaacaaaatgcaataagatttccatcattgtttgcttcattaggaatataattaatgaatgatgagtgttaatgctatacaacgcagcat 280  Q
    |||||  |||||| ||||| || ||| |||  ||| |||||||||||||||||| ||| |||| ||||||||||| |  |||| |||| ||| | |||||    
T  4926430 agcaatgctaaaagaaaattcagtaacattctcattattgtttgcttcattagggatacaatttatgaatgatgaatactaatactatgcaaggaagcat 4926529  T
Q  281 ttataccgctagagagt 297  Q
     ||||| ||||||||||    
T  4926530 atatactgctagagagt 4926546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 115 - 286
Target Start/End: Complemental strand, 10445547 - 10445377
Alignment:
Q  115 acaaattaataacacaaacctgattgatcctgagcttgtatcaaaactaaaatagtaagggcaccaagcaacactaaaacaaaatgcaataagatttcca 214  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||  | |||||||| |   ||  |||||||| ||| |||  ||    
T  10445547 acaaattcataa-acaaacctgattgatcctgagcttgtatcaaaaccaaaatagtaagaacgccaagcaatatggaacgaaaatgcagtaacattctca 10445449  T
Q  215 tcattgtttgcttcattaggaatataattaatgaatgatgagtgttaatgctatacaacgcagcatttatac 286  Q
    |||||||||| ||||||||| ||| |||||  || |||| ||||||||| |||||||| | |||||||||||    
T  10445448 tcattgtttgtttcattagggatacaattatggactgataagtgttaattctatacaaggaagcatttatac 10445377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 128 - 230
Target Start/End: Original strand, 4777665 - 4777767
Alignment:
Q  128 acaaacctgattgatcctgagcttgtatcaaaactaaaatagtaagggcaccaagcaacactaaaacaaaatgcaataagatttccatcattgtttgctt 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||  |||||| |||||||| ||| |||  ||| |||||||||||    
T  4777665 acaaacctgattgatcctgagcttgtatcaaaactaaaatagtaagaccaccaagcaatgctaaaagaaaatgcagtaacattctcattattgtttgctt 4777764  T
Q  228 cat 230  Q
    |||    
T  4777765 cat 4777767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 128 - 271
Target Start/End: Complemental strand, 4680342 - 4680191
Alignment:
Q  128 acaaacctgattgatcctgagcttgtatcaaaactaaaatagtaagggcaccaagcaacactaaaacaaaatgcaa------taagatttccatcattgt 221  Q
    ||||||||||||||||||||||||||| |||||| ||| |||||||| |||||| ||| ||| ||| |||||||||      ||| ||| | |||| | |    
T  4680342 acaaacctgattgatcctgagcttgtaccaaaaccaaagtagtaaggacaccaaacaatactgaaagaaaatgcaaaggcagtaacattcctatcaattt 4680243  T
Q  222 ttgcttcattaggaatat--aattaatgaatgatgagtgttaatgctataca 271  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||||||||||    
T  4680242 ttgcttcattaggaatatacaattaatgaatgatgagtgctaatgctataca 4680191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 115 - 232
Target Start/End: Complemental strand, 4713821 - 4713705
Alignment:
Q  115 acaaattaataacacaaacctgattgatcctgagcttgtatcaaaactaaaatagtaagggcaccaagcaacactaaaacaaaatgcaataagatttcca 214  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||| ||| |||||||| |||||| ||| || |||| |||||||| ||| |||  ||    
T  4713821 acaaattcataa-acaaacctgattgatcctgagcttgtatcaaaacaaaagtagtaaggacaccaaacaataccaaaagaaaatgcagtaacattctca 4713723  T
Q  215 tcattgtttgcttcatta 232  Q
    ||||||||||||||||||    
T  4713722 tcattgtttgcttcatta 4713705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 115 - 248
Target Start/End: Complemental strand, 4725270 - 4725135
Alignment:
Q  115 acaaattaataacacaaacctgattgatcctgagcttgtatcaaaactaaaa---tagtaagggcaccaagcaacactaaaacaaaatgcaataagattt 211  Q
    ||||||| |||| |||||||||||||||| ||||||||||||||||| ||||   |||||||  |||||| ||| || |||| ||||| |  ||| |||     
T  4725270 acaaattcataa-acaaacctgattgatcttgagcttgtatcaaaaccaaaatagtagtaagaacaccaaacaataccaaaagaaaatactgtaacattc 4725172  T
Q  212 ccatcattgtttgcttcattaggaatataattaatga 248  Q
    |||||||||||||||||||||||||||  ||||||||    
T  4725171 ccatcattgtttgcttcattaggaatactattaatga 4725135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 129 - 255
Target Start/End: Complemental strand, 4687968 - 4687842
Alignment:
Q  129 caaacctgattgatcctgagcttgtatcaaaactaaaatagtaagggcaccaagcaacactaaaacaaaatgcaataagatttccatcattgtttgcttc 228  Q
    ||||||||||||||||||||||||||| | ||| ||||||| |||| |||||| ||| || ||||  ||||||| ||  ||| | |||| ||||||||||    
T  4687968 caaacctgattgatcctgagcttgtatgagaaccaaaatagcaaggacaccaaacaagaccaaaaggaaatgcagtagcattcctatcactgtttgcttc 4687869  T
Q  229 attaggaatataattaatgaatgatga 255  Q
    |||| ||||| || ||| |||||||||    
T  4687868 attaagaatacaactaaggaatgatga 4687842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 115 - 219
Target Start/End: Complemental strand, 4744740 - 4744634
Alignment:
Q  115 acaaattaataacacaaacctgattgatcctgagcttgtatcaaaactaaaatagt---aagggcaccaagcaacactaaaacaaaatgcaataagattt 211  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||   |||| |||||| ||| || |||| |||||||| ||| |||     
T  4744740 acaaattcataa-acaaacctgattgatcctgagcttgtatcaaaacaaaaatagtaggaaggacaccaaacaataccaaaagaaaatgcagtaacattc 4744642  T
Q  212 ccatcatt 219  Q
    ||||||||    
T  4744641 ccatcatt 4744634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 4702473 - 4702370
Alignment:
Q  129 caaacctgattgatcctgagcttgtatcaaaactaaaatagtaagggcaccaagcaacactaaaacaaaatgcaataagatttccatcattgtttgcttc 228  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| || |||  || ||  ||| |||||| | ||| |||  ||||| ||||||||||    
T  4702473 caaacctgattgatcctgagcttgtatcaaaaccaaaatagtaaggacagcaaataatacagaaaaaaaatgtagtaacattctcatcactgtttgcttc 4702374  T
Q  229 atta 232  Q
    ||||    
T  4702373 atta 4702370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 21440707 - 21440753
Alignment:
Q  128 acaaacctgattgatcctgagcttgtatcaaaactaaaatagtaagg 174  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  21440707 acaaacctgattgatcctgagcttgtatcaaaaccaaaatagtaagg 21440753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 4735735 - 4735680
Alignment:
Q  115 acaaattaataacacaaacctgattgatcctgagcttgtatcaaaactaaaatagta 171  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||    
T  4735735 acaaattcataa-acaaacctgattgatcctgagcttgtatcaaaaccaaaatagta 4735680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 204
Target Start/End: Original strand, 4906199 - 4906274
Alignment:
Q  129 caaacctgattgatcctgagcttgtatcaaaactaaaatagtaagggcaccaagcaacactaaaacaaaatgcaat 204  Q
    ||||||||||||||||||||||||||||||||| ||||| || ||| ||||||| || ||  ||| ||||||||||    
T  4906199 caaacctgattgatcctgagcttgtatcaaaaccaaaattgtgaggacaccaagtaataccgaaagaaaatgcaat 4906274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 4914678 - 4914735
Alignment:
Q  128 acaaacctgattgatcctgagcttgtatcaaaactaaaatagtaagggcaccaagcaa 185  Q
    ||||| ||||||||||||||| ||||||| || | |||||||||||| ||||||||||    
T  4914678 acaaatctgattgatcctgaggttgtatcgaagccaaaatagtaaggacaccaagcaa 4914735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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