View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_40 (Length: 385)
Name: NF8548A_low_40
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 4 - 363
Target Start/End: Original strand, 50466714 - 50467073
Alignment:
| Q |
4 |
agttgggatctcttatccaaagcttcacaccttatcctatagagaaaacttagaaataataatgcacctgttttttctgtgactaaacaaatgcttgtac |
103 |
Q |
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| T |
50466714 |
agttgggatctcttatccaaagcttcacaccttatcctatagagaaaacttagaaataataatgcacctgttttttctgtgactaaacaaatgcttgtac |
50466813 |
T |
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| Q |
104 |
actgatccatgtgatcatgggtcctaaaataatggcttagttgtagataaaagtaacacttagcaaacttgaaaatgaggtttgagtagaggtccccaac |
203 |
Q |
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| T |
50466814 |
actgatccatgtgatcatgggtcctaaaataatggcttagttgtagataaaagtaacacttagcaaacttgaaaatgaggtttgagtagaggtccccaac |
50466913 |
T |
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| Q |
204 |
attatttcttatcaaattaaagccattaagcttttaatagtaaacatgacaaagaataattgtaacctcatgatacataaaaggaatgataactatatta |
303 |
Q |
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| T |
50466914 |
attatttcttatcaaattaaagccattaagcttttaatagtaaacatgacaaagaataattgtaacctcatgatacataaaaggaatgataactatatta |
50467013 |
T |
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| Q |
304 |
cactaatgttgatgaatcaataagtactttggtagtgattacatccaatggatgccttct |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50467014 |
cactaatgttgatgaatcaataagtactttggtagtgattacatccaatggatgccttct |
50467073 |
T |
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