View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8548A_low_41 (Length: 384)

Name: NF8548A_low_41
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8548A_low_41
NF8548A_low_41
[»] chr3 (6 HSPs)
chr3 (10-382)||(3175972-3176344)
chr3 (14-99)||(3175790-3175875)
chr3 (14-98)||(3175607-3175691)
chr3 (51-126)||(3175923-3175998)
chr3 (51-126)||(3175737-3175812)
chr3 (78-126)||(3175581-3175629)
[»] chr1 (3 HSPs)
chr1 (35-376)||(24541195-24541537)
chr1 (14-99)||(24540985-24541070)
chr1 (52-126)||(24540933-24541007)
[»] chr5 (4 HSPs)
chr5 (35-366)||(20963741-20964058)
chr5 (9-99)||(20964186-20964276)
chr5 (52-126)||(20964249-20964323)
chr5 (51-108)||(20964081-20964138)
[»] chr2 (5 HSPs)
chr2 (119-382)||(41525197-41525460)
chr2 (14-99)||(41524573-41524658)
chr2 (14-99)||(41524917-41525002)
chr2 (51-128)||(41524864-41524941)
chr2 (14-99)||(41524743-41524822)
[»] chr6 (2 HSPs)
chr6 (152-266)||(14675143-14675257)
chr6 (35-90)||(14675026-14675081)
[»] chr4 (2 HSPs)
chr4 (38-97)||(16591879-16591938)
chr4 (36-102)||(35335715-35335781)


Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 10 - 382
Target Start/End: Original strand, 3175972 - 3176344
Alignment:
Q  10 atgagaaggagcaggggatggtgagtgatgttggtggtggcgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggt 109  Q
    ||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3175972 atgagaaggagcaagggatggtgagtgatgttggtggcggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggt 3176071  T
Q  110 gcatgtgatggtgagtggttgtggtgaggggggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaa 209  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3176072 gcatgtgatggtgagtggttgtggtgaggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaa 3176171  T
Q  210 aagtttctagctcttcagctaaagctatgaaagaggttatttcgagaaagagaaaaactaatactaaagttttggccattttttggtttaagagaaggta 309  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  3176172 aagtttctagctcttcagctaaagctatgaaagaggttatttggagaaagagaaaaaccaatactaaagttttggccattttttggtttaagagaatgta 3176271  T
Q  310 accttgagagagagggagatgagtgatgttggtgtgttgagagagtgtgatagttgatctatttataagagct 382  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3176272 accttgaaagagagggagttgagtgatgttggtgtgttgagagagtgtgagagttgatctatttataagagct 3176344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 3175790 - 3175875
Alignment:
Q  14 gaaggagcaggggatggtgagtgatgttggtggtggcgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaac 99  Q
    ||||| || ||||||||||||||||||||||||||| |||| || || ||||| |||||||| |||||||||||||||||||||||    
T  3175790 gaaggggcgggggatggtgagtgatgttggtggtggtgatgagttggaggtttggcagggtgaggaggatgtaaaggagtgtgaac 3175875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 3175607 - 3175691
Alignment:
Q  14 gaaggagcaggggatggtgagtgatgttggtggtggcgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaa 98  Q
    ||||| |||||||| ||||||||||||||||||||| |||| || || ||||| |||||||| ||||||||||||||||||||||    
T  3175607 gaaggggcaggggaaggtgagtgatgttggtggtggtgatgtgttggaggtttggcagggtgaggaggatgtaaaggagtgtgaa 3175691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 3175923 - 3175998
Alignment:
Q  51 gatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtg 126  Q
    ||||||| || ||||| ||||| ||  ||||||||||||||||||||||||||||||| ||| | |||||||||||    
T  3175923 gatgggttggaggttttgcaggatgacgaggatgtaaaggagtgtgaacatgagaaggagcaagggatggtgagtg 3175998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 3175737 - 3175812
Alignment:
Q  51 gatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtg 126  Q
    ||||||| |||||||| ||||||||  || |||||||||||||||||||||| ||||| ||  | |||||||||||    
T  3175737 gatgggttgggggttttgcagggtgacgatgatgtaaaggagtgtgaacatgggaaggggcgggggatggtgagtg 3175812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 3175581 - 3175629
Alignment:
Q  78 gaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtg 126  Q
    ||||||||||||||||||||||||| ||||| ||| | || ||||||||    
T  3175581 gaggatgtaaaggagtgtgaacatgggaaggggcaggggaaggtgagtg 3175629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 35 - 376
Target Start/End: Original strand, 24541195 - 24541537
Alignment:
Q  35 tgatgttggtggtggcgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtggttgtggt 134  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24541195 tgatgttggtggtggtgatgggtcgggggtttagcagggtgaggaggatgtaaaggagtgtgaacatgagaaggtgcatgggatggtgagtggttgtggt 24541294  T
Q  135 gaggggggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagc 234  Q
    |||| ||||||||||||||||||||||  |||||||||||||||| |||| ||||| ||| |||||||||||||| ||||||||||| |||||| || ||    
T  24541295 gaggtgggctagctaatggtttatgaacaggtgacttagttggggaatgatgtggagttgctggtttgtgatgaagagtttctagcttttcagcaaatgc 24541394  T
Q  235 tatgaaagaggttatttcgagaaagagaaaaactaatactaaagttttggccattttttggt-ttaagagaaggtaaccttgagagagagggagatgagt 333  Q
    ||||||||||||||||| ||||||||||||||  ||||  | |||||| |||||||||| || |||||||||||||||||||| ||||||||||||||||    
T  24541395 tatgaaagaggttatttggagaaagagaaaaaacaataagagagttttcgccatttttttgtgttaagagaaggtaaccttgaaagagagggagatgagt 24541494  T
Q  334 gatgttggtgtgttgagagagtgtgatagttgatctatttata 376  Q
    ||||||| |||||||||||||||||| ||||||||||||||||    
T  24541495 gatgttgatgtgttgagagagtgtgagagttgatctatttata 24541537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 24540985 - 24541070
Alignment:
Q  14 gaaggagcaggggatggtgagtgatgttggtggtggcgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaac 99  Q
    ||||| ||||||||||||||||||||||||||| || ||||||| || ||||| |||||||| |||||||||||||||||||||||    
T  24540985 gaaggggcaggggatggtgagtgatgttggtggcggtgatgggttggaggtttggcagggtgaggaggatgtaaaggagtgtgaac 24541070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 24540933 - 24541007
Alignment:
Q  52 atgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtg 126  Q
    |||||| |||||||| ||||||||  ||||||||||||||||||||||||| ||||| ||| | |||||||||||    
T  24540933 atgggtggggggttttgcagggtgacgaggatgtaaaggagtgtgaacatgggaaggggcaggggatggtgagtg 24541007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 173; Significance: 6e-93; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 35 - 366
Target Start/End: Complemental strand, 20964058 - 20963741
Alignment:
Q  35 tgatgttggtggtggcgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtggttgtggt 134  Q
    ||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20964058 tgatgctggtggtggtgatgggtcgggggtttagcagggtgaggaggatgtaaaggagtgtgaacatgagaaggtgcatgggatggtgagtggttgtggt 20963959  T
Q  135 gaggggggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagc 234  Q
    |               ||||||||||| |||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||  || ||    
T  20963958 g---------------tggtttatgaaccggtgacttagttgggggatgaagtggagttgctggtttgttatgaaaagtttctagctcttcagtaaatgc 20963874  T
Q  235 tatgaaagaggttatttcgagaaagagaaaaactaatactaaagttttggccatt--ttttggtttaagagaaggtaaccttgagagagagggagatgag 332  Q
    ||||||||||||||||| ||||||||||||||  ||||| | |||||||||||||  |||||  ||||||||| | |||||||| ||||||||||| ||     
T  20963873 tatgaaagaggttatttggagaaagagaaaaaacaataccagagttttggccattttttttgtgttaagagaaag-aaccttgaaagagagggagaggat 20963775  T
Q  333 tgatgttggtgtgttgagagagtgtgatagttga 366  Q
    ||||||||||||||||||||||||||| ||||||    
T  20963774 tgatgttggtgtgttgagagagtgtgagagttga 20963741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 20964276 - 20964186
Alignment:
Q  9 aatgagaaggagcaggggatggtgagtgatgttggtggtggcgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaac 99  Q
    |||| ||||| || ||||||||||||||||||||||||||| ||||||| || ||||| ||||| || ||| |||||||||||||||||||    
T  20964276 aatgtgaaggggcgggggatggtgagtgatgttggtggtggtgatgggttggaggtttggcaggatgaggatgatgtaaaggagtgtgaac 20964186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 20964323 - 20964249
Alignment:
Q  52 atgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtg 126  Q
    |||||| |||||||| ||||||||  ||||||||||||||||||||| ||| ||||| ||  | |||||||||||    
T  20964323 atgggtggggggttttgcagggtgacgaggatgtaaaggagtgtgaaaatgtgaaggggcgggggatggtgagtg 20964249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 20964138 - 20964081
Alignment:
Q  51 gatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaagg 108  Q
    ||||||| |||||||| ||||||||  ||||||||| ||||||||||||||| |||||    
T  20964138 gatgggttgggggttttgcagggtgacgaggatgtataggagtgtgaacatgggaagg 20964081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 141; Significance: 8e-74; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 119 - 382
Target Start/End: Original strand, 41525197 - 41525460
Alignment:
Q  119 ggtgagtggttgtggtgaggggggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttcta 218  Q
    ||||||||| |||||||||| ||| |||| ||||||||||||| ||||||||||||||||| |||||||||| ||| |||||||||||||| ||||||||    
T  41525197 ggtgagtggctgtggtgaggtgggttagccaatggtttatgaaccggtgacttagttgggg-atgaagtggagttgctggtttgtgatgaagagtttcta 41525295  T
Q  219 gctcttcagctaaagctatgaaagaggttatttcgagaaagagaaaaact-aatactaaagttttggccattttttggtttaagagaaggtaaccttgag 317  Q
    |||||||||| || |||||||| |||||||||| ||| ||||||||||   ||||||| |||||||||||||||||| |||||||||| | ||| ||||     
T  41525296 gctcttcagcaaatgctatgaaggaggttatttggagtaagagaaaaaaacaatactagagttttggccattttttgttttaagagaatgcaactttgaa 41525395  T
Q  318 agagagggagatgagtgatgttggtgtgttgagagagtgtgatagttgatctatttataagagct 382  Q
    |||||||||||  ||| ||||||||| ||||||||||||||| |||||||||||||||| |||||    
T  41525396 agagagggagagaagtaatgttggtgggttgagagagtgtgagagttgatctatttataggagct 41525460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 41524573 - 41524658
Alignment:
Q  14 gaaggagcaggggatggtgagtgatgttggtggtggcgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaac 99  Q
    ||||||||||||||||||||||| |||||||||||| ||||||| || ||||| | |||||  |||||||||||||||||||||||    
T  41524573 gaaggagcaggggatggtgagtggtgttggtggtggtgatgggttggaggtttggtagggtaaggaggatgtaaaggagtgtgaac 41524658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 41524917 - 41525002
Alignment:
Q  14 gaaggagcaggggatggtgagtgatgttggtggtggcgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaac 99  Q
    ||||||||||||||||||||||| |||||||||||| ||||||| || ||||| | | |||   ||||||||||||||||||||||    
T  41524917 gaaggagcaggggatggtgagtggtgttggtggtggtgatgggttggaggtttggtatggtaaagaggatgtaaaggagtgtgaac 41525002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 41524864 - 41524941
Alignment:
Q  51 gatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtggt 128  Q
    ||||||| |||||||| ||||||||  |||||| ||||||||| |||||||| ||||| ||| | |||||||||||||    
T  41524864 gatgggttgggggttttgcagggtgacgaggatataaaggagtatgaacatgggaaggagcaggggatggtgagtggt 41524941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 41524743 - 41524822
Alignment:
Q  14 gaaggagcaggggatggtgagtgatgttggtggtggcgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaac 99  Q
    |||||||||||||||||||||||      ||||||| ||||||| || ||||| | |||||  |||||||||||||||||||||||    
T  41524743 gaaggagcaggggatggtgagtg------gtggtggtgatgggttggaggtttggtagggtaaggaggatgtaaaggagtgtgaac 41524822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 152 - 266
Target Start/End: Original strand, 14675143 - 14675257
Alignment:
Q  152 ggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttattt 251  Q
    |||||||| | ||||||||| |||||||||||||||||  ||| |||||||||||||| |||||| |||||||| || ||  | | ||||||||||||||    
T  14675143 ggtttatgcaccggtgactttgttgggggatgaagtggtgttgttggtttgtgatgaagagtttcaagctcttccgcaaacacaacgaaagaggttattt 14675242  T
Q  252 cgagaaagagaaaaa 266  Q
     ||| ||||||||||    
T  14675243 ggagtaagagaaaaa 14675257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 14675026 - 14675081
Alignment:
Q  35 tgatgttggtggtggcgatgggtcgggggtttagcagggtggggaggatgtaaagg 90  Q
    ||||||||||||||| |||||||  |||||||||||||||| || ||| |||||||    
T  14675026 tgatgttggtggtggtgatgggttaggggtttagcagggtgaggtggaggtaaagg 14675081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 16591938 - 16591879
Alignment:
Q  38 tgttggtggtggcgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtga 97  Q
    |||||||||||| || |||| || |||||||||||||| | ||| |||||||||||||||    
T  16591938 tgttggtggtggtgacgggttggaggtttagcagggtgagaagggtgtaaaggagtgtga 16591879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 35335715 - 35335781
Alignment:
Q  36 gatgttggtggtggcgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatg 102  Q
    ||||||| || ||||||||||| |||||||||| | | || ||||| |||||||||| |||||||||    
T  35335715 gatgttgatgatggcgatgggttgggggtttagtatgatgaggagggtgtaaaggagcgtgaacatg 35335781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University