View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8548A_low_42 (Length: 383)
Name: NF8548A_low_42
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_42 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 32898991 - 32898615
Alignment:
| Q |
1 |
aatatcaccaccaccgggaaaaggctgcgccgcggccgccgaggagaaaaagaaaggaagctgaagattatcttgtagtgatctcaagctaggaagagca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32898991 |
aatatcaccaccaccgggaaaaggctgcgccgcggcggccgaggagaaaaagaaaggaagctgaagattatcttgtagtgatctcaagctaggaaaagca |
32898892 |
T |
|
| Q |
101 |
gaaacaccgacattcctctgaaaccttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| |
|
|
| T |
32898891 |
gaaacaccgacattcctctgaaaccttgcaaaaggatccattgttgcattcatagaaggtgaaacaagatcaaaacttccattgctgttgctgttgaagt |
32898792 |
T |
|
| Q |
201 |
tgttgtgaacagagacaacatttgatgttgtaggtgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgtcgtagttaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32898791 |
tgttgtgaacagagacaacatttgatgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttaca |
32898692 |
T |
|
| Q |
301 |
catttgaccaccgttgaatgaggcggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaactg |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32898691 |
catttgaccaccgttgaatgaggcggtgctagcggcggtgtagggagatgaatcaagaagaggtggaaggtaaactg |
32898615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 125 - 375
Target Start/End: Complemental strand, 17415196 - 17414958
Alignment:
| Q |
125 |
cttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttg |
224 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| ||| ||||||||||| |
|
|
| T |
17415196 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcagcgacaacatttg |
17415097 |
T |
|
| Q |
225 |
atgttgtaggtgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgtcgtagttacacatttgaccaccgttgaatgaggc |
324 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | |||||||||| ||| |
|
|
| T |
17415096 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgtt------------ggagttacacatttggtcgccgttgaatgtggc |
17415009 |
T |
|
| Q |
325 |
ggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaac |
375 |
Q |
| |
|
| |||||||||| ||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
17415008 |
gatgctagcggcggtgtaaggagatgaatcaagaagaggtggaagataaac |
17414958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 125 - 375
Target Start/End: Original strand, 20409621 - 20409859
Alignment:
| Q |
125 |
cttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttg |
224 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| || ||||||||||| |
|
|
| T |
20409621 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcaacgacaacatttg |
20409720 |
T |
|
| Q |
225 |
atgttgtaggtgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgtcgtagttacacatttgaccaccgttgaatgaggc |
324 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | |||||||||| ||| |
|
|
| T |
20409721 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgtt------------ggagttacacatttggtcgccgttgaatgtggc |
20409808 |
T |
|
| Q |
325 |
ggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaac |
375 |
Q |
| |
|
| |||||||||| ||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
20409809 |
gatgctagcggcggtgtaaggagatgaatcaagaagaggtggaagataaac |
20409859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 125 - 375
Target Start/End: Complemental strand, 46312720 - 46312482
Alignment:
| Q |
125 |
cttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttg |
224 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| || ||||||||||| |
|
|
| T |
46312720 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcaacgacaacatttg |
46312621 |
T |
|
| Q |
225 |
atgttgtaggtgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgtcgtagttacacatttgaccaccgttgaatgaggc |
324 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | |||||||||| ||| |
|
|
| T |
46312620 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgtt------------ggagttacacatttggtcgccgttgaatgtggc |
46312533 |
T |
|
| Q |
325 |
ggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaac |
375 |
Q |
| |
|
| |||||||||| ||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
46312532 |
gatgctagcggcggtgtaaggagatgaatcaagaagaggtggaagataaac |
46312482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 125 - 375
Target Start/End: Complemental strand, 40169283 - 40169054
Alignment:
| Q |
125 |
cttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttg |
224 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| ||| ||||||||||| |
|
|
| T |
40169283 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcagcgacaacatttg |
40169184 |
T |
|
| Q |
225 |
atgttgtaggtgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgtcgtagttacacatttgaccaccgttgaatgaggc |
324 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||| | |||||||||| ||| |
|
|
| T |
40169183 |
a---------tgttgtggagaaacaggacacgtgctcctttagatcggtgttgtt------------ggagttacacatttggtcgccgttgaatgtggc |
40169105 |
T |
|
| Q |
325 |
ggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaac |
375 |
Q |
| |
|
| ||||||| || ||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
40169104 |
gatgctagcagcggtgtaaggagatgaatcaagaagaggtggaagataaac |
40169054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 147 - 253
Target Start/End: Original strand, 46482987 - 46483093
Alignment:
| Q |
147 |
cattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttgatgttgtaggtgttgtggagaa |
246 |
Q |
| |
|
||||| ||||||| ||||| |||||||| |||||||||||||||| | ||||| ||||||| ||||||||||||||||||||| ||| | |||||||||| |
|
|
| T |
46482987 |
cattcgtagaaggagaaacaagatcaaagcttccattgttgttgctgctgaagttgttgtggacagagacaacatttgatgttctagatattgtggagaa |
46483086 |
T |
|
| Q |
247 |
acaggac |
253 |
Q |
| |
|
| ||||| |
|
|
| T |
46483087 |
ataggac |
46483093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 46482880 - 46482949
Alignment:
| Q |
26 |
tgcgccgcggccgccgaggagaaaaagaaaggaagctgaagattatcttgtagtgatctcaagctaggaa |
95 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
46482880 |
tgcgccgcggccgccgtggagaaaaagaaaggaagctggagattatcttgtagtgacctcaatctaggaa |
46482949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University