View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_59 (Length: 360)
Name: NF8548A_low_59
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_59 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 12 - 355
Target Start/End: Original strand, 45282305 - 45282648
Alignment:
| Q |
12 |
gagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccta |
111 |
Q |
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| T |
45282305 |
gagacaagacaattgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctcctt |
45282404 |
T |
|
| Q |
112 |
cgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcat |
211 |
Q |
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| T |
45282405 |
ggtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcat |
45282504 |
T |
|
| Q |
212 |
ggataatcaattaattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaa |
311 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282505 |
ggataatcaattaattagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaa |
45282604 |
T |
|
| Q |
312 |
atgaattttgagagtgatgccactttttctcatatactgtttct |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45282605 |
atgaattttgagagtgatgccactttttctcatatactctttct |
45282648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 355
Target Start/End: Original strand, 45274060 - 45274405
Alignment:
| Q |
10 |
cagagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcc |
109 |
Q |
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| T |
45274060 |
cagagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctcc |
45274159 |
T |
|
| Q |
110 |
tacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattc |
209 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
45274160 |
tacgtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccctattgcggtgttggctgcacgc |
45274259 |
T |
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| Q |
210 |
atggataatcaattaattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaa |
309 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||| | | ||||||||||| ||||||||||||||||| |
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| T |
45274260 |
atggataatcaattaattagtaatttcgatcacactggctatatatgtcaatgttatatgtatatatttctcttttcaatgcgagttatgttttcttcaa |
45274359 |
T |
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| Q |
310 |
aaatgaattttgagagtgatgccactttttctcatatactgtttct |
355 |
Q |
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|||| ||||||||||||||||| ||||||||| ||||||| ||||| |
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| T |
45274360 |
aaataaattttgagagtgatgctactttttcttatatactctttct |
45274405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 10 - 268
Target Start/End: Original strand, 45293643 - 45293904
Alignment:
| Q |
10 |
cagagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcc |
109 |
Q |
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|||||| || ||||||||||||| | ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45293643 |
cagagataacacaattgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcc |
45293742 |
T |
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| Q |
110 |
tacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattc |
209 |
Q |
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| ||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
45293743 |
ttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgc |
45293842 |
T |
|
| Q |
210 |
atggataatcaattaattagtaatttcaatcacattggc---tatatatgtcaatgttatat |
268 |
Q |
| |
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|||||| |||||||||||||||| ||| |||||| ||| ||||| |||||||||||||| |
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| T |
45293843 |
atggatgatcaattaattagtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45293904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 10 - 268
Target Start/End: Original strand, 45302603 - 45302864
Alignment:
| Q |
10 |
cagagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcc |
109 |
Q |
| |
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|||||| || ||||||||||||| | ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45302603 |
cagagataacacaattgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcc |
45302702 |
T |
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| Q |
110 |
tacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattc |
209 |
Q |
| |
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| ||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
45302703 |
ttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgc |
45302802 |
T |
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| Q |
210 |
atggataatcaattaattagtaatttcaatcacattggc---tatatatgtcaatgttatat |
268 |
Q |
| |
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|||||| |||||||||||||||| ||| |||||| ||| ||||| |||||||||||||| |
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| T |
45302803 |
atggatgatcaattaattagtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45302864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 24 - 349
Target Start/End: Original strand, 45270547 - 45270870
Alignment:
| Q |
24 |
ttgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgtttctaaatg |
123 |
Q |
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||||||||| | ||||||||| ||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45270547 |
ttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctcctatgtttctaaatg |
45270646 |
T |
|
| Q |
124 |
ccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaatt |
223 |
Q |
| |
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|||| ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
45270647 |
ccacagcttgcataccggcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaatt |
45270746 |
T |
|
| Q |
224 |
aattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagtt-atgttttcttcaaaaatgaattttga |
322 |
Q |
| |
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||||||||| ||| || ||| |||||||||| | ||| | | | ||| |||||||||||||||| |||| ||||||| |||||||||||||||||| |
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| T |
45270747 |
aattagtaacttctataacaccggctatatatatgtatg---tgtctatatatatatcttttcaatgtgagttaatgtttttttcaaaaatgaattttga |
45270843 |
T |
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| Q |
323 |
gagtgatgccactttttctcatatact |
349 |
Q |
| |
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||||||||| ||| |||| ||| |||| |
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| T |
45270844 |
gagtgatgctactatttcacatctact |
45270870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 45293957 - 45294022
Alignment:
| Q |
279 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcat |
344 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
45293957 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcat |
45294022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 45302917 - 45302982
Alignment:
| Q |
279 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcat |
344 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
45302917 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcat |
45302982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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