View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8548A_low_65 (Length: 356)
Name: NF8548A_low_65
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_65 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 5 - 356
Target Start/End: Complemental strand, 31784801 - 31784450
Alignment:
| Q |
5 |
gtttggtgttgtatgcgcctttttagccgtatctgcaagtaaatcgggatcatgaagttcattgtcaccaatcaattttcgtttgtttatgcaatttaga |
104 |
Q |
| |
|
||||| ||||||||| ||| ||||||||| |||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31784801 |
gtttgatgttgtatgtgcccttttagccgcatctgcgagtaaatggggatcgtgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttaga |
31784702 |
T |
|
| Q |
105 |
ttaggaatgacatttattgcatttttagctacaccagtgcttttgtttctgatgtctcaaaccatatgttcaacttttatcttgatccctccgcccctta |
204 |
Q |
| |
|
|||||||||| ||||||| ||| |||| |||||| |||||| |||||||||||||| |||||||||||||||||| |||||||| |||||||||| || |
|
|
| T |
31784701 |
ttaggaatgatgtttattgaattgttaggtacaccgatgctttggtttctgatgtctctaaccatatgttcaactttgatcttgatacctccgccccgta |
31784602 |
T |
|
| Q |
205 |
cactcattattctttcctcataatagttggaaggttcccttgtttgcatcaaactattttggcaacctgagaaagaaaaaacaaatattgcattgtttac |
304 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31784601 |
cactcagcattctttcctcagaatagttggaaggttcccttgtttgcatcaaactattttggtaacctgagaaagaaaaaacaaatattgcattgtttgc |
31784502 |
T |
|
| Q |
305 |
actaacttctcgtccatgcgagtctgtgatttttcctgtcttgatggcttga |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31784501 |
actaacttctcgtccatgcgagtctgtgatttttcctgtcttgatggcttga |
31784450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 51 - 324
Target Start/End: Original strand, 19631618 - 19631893
Alignment:
| Q |
51 |
ggatcatgaagttcattgtcaccaatcaattttcgtttgtttatgcaatttagattaggaatgacatttattgcatttttagctacaccagtgcttttgt |
150 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||| |||||| || |
|
|
| T |
19631618 |
ggatcgtgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattaggaatgacatttattgaattgttagctacaccgatgctttggt |
19631717 |
T |
|
| Q |
151 |
ttctgatgtctcaaaccatatgttcaacttttatcttgatccctccgccccttacactcattattc--tttcctcataatagttggaaggttcccttgtt |
248 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19631718 |
ttctgatgtctctaaccatatgttcaacttttatcttgatacctccgccccttacacttattattctttttcctcataatagttggaaggttcccttgtt |
19631817 |
T |
|
| Q |
249 |
tgcatcaaactattttggcaacctgagaaagaaaaaacaaatattgcattgtttacactaacttctcgtccatgcg |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
19631818 |
tgcatcaaactattttggcaacctgagaaagaaaaaacaaatagtacattgtttacactaacttctcgtccatgcg |
19631893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 320 - 356
Target Start/End: Original strand, 19633725 - 19633761
Alignment:
| Q |
320 |
atgcgagtctgtgatttttcctgtcttgatggcttga |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19633725 |
atgcgagtctgtgatttttcctgtcttgatggcttga |
19633761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University