View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8548A_low_66 (Length: 355)
Name: NF8548A_low_66
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_66 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 6 - 355
Target Start/End: Complemental strand, 33542416 - 33542067
Alignment:
| Q |
6 |
gtttggtgttggcagcggtgtttttccgttggtatttatgtcataaggtattctgttgaacaatgatattggcctaagtgtaggtgtgttgtcattaagt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33542416 |
gtttggtgttggcagcggtgtttttccgttggtatttatgtcataaggtattctgttgaacaatgatattggcctaagtggaggtgtgttgtcattaagt |
33542317 |
T |
|
| Q |
106 |
gaaaaaacaggttggttccccattggtgtctgaatgttactgtttatcacataaccaatgacaccaaaagaatcacgatacatgtttggaatgtttatgt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33542316 |
gaaaaaacaggttggttccccattggtgtctgaatgttactgtttatcacagaaccaatgacaccaaaagaatcacgatacatgtttggaatgtttatgt |
33542217 |
T |
|
| Q |
206 |
taaatggatgtttaggagtgtagttattggttgaaggagtgatttgagtagtccgattagnnnnnnngccttgttttgattgctacaaatttgattgaag |
305 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
33542216 |
taaatggatgtttaggagtgtagttactggttgaaggagtgatttgagtagtccgattagtttttttgccttgttttgattgctgcaaatttgattgaag |
33542117 |
T |
|
| Q |
306 |
attattgttagtgatattagcaaaaggggtacgttggattgtaacattga |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33542116 |
attattgttagtgatattagcaaaaggggtacgttggattgtaacattga |
33542067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 6 - 355
Target Start/End: Complemental strand, 26222852 - 26222503
Alignment:
| Q |
6 |
gtttggtgttggcagcggtgtttttccgttggtatttatgtcataaggtattctgttgaacaatgatattggcctaagtgtaggtgtgttgtcattaagt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26222852 |
gtttggtgttggcagcggtgtttttccgttggtatttatgtcataaggtattttgttgaacaatgatattggcctaagtggaggtgtgttgtcattaagt |
26222753 |
T |
|
| Q |
106 |
gaaaaaacaggttggttccccattggtgtctgaatgttactgtttatcacataaccaatgacaccaaaagaatcacgatacatgtttggaatgtttatgt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26222752 |
gaaaaaacaggttggttccccattggtgtctgaatgttactgtttatcacagaaccaatgacaccaaaagaatcacgatacatgtttggaatgtttatgt |
26222653 |
T |
|
| Q |
206 |
taaatggatgtttaggagtgtagttattggttgaaggagtgatttgagtagtccgattagnnnnnnngccttgttttgattgctacaaatttgattgaag |
305 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
26222652 |
taaatggatgtttaggagtgtagttactggttgaaggagtgatttgagtagtctgattagtttttttgccttgttttgattgctgcaaatttgattgaag |
26222553 |
T |
|
| Q |
306 |
attattgttagtgatattagcaaaaggggtacgttggattgtaacattga |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26222552 |
attattgttagtgatattagcaaaaggggtacgttggattgtaacattga |
26222503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University