View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_67 (Length: 352)
Name: NF8548A_low_67
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_67 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 345
Target Start/End: Original strand, 10507218 - 10507555
Alignment:
| Q |
7 |
tgttttgtaagagtgtttttgttaacttgttcaaagaatttgtctaagaatgataaaataaaaatagtgagtgaatattattgtataaaaagtaaatacc |
106 |
Q |
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| T |
10507218 |
tgttttgtaagagtgtttttgttaacttgttcaaagaatttgtctaagaatgataaaataaaaatagtgagtgaatattattgtataaaaagtaaatacc |
10507317 |
T |
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| Q |
107 |
aaacttgcatggaagaagttatcaactcttttacttgtcgatttcctggctttgaagctttaacacgatcattgggtagtgaaattcaatggatcttccc |
206 |
Q |
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| T |
10507318 |
aaacttgcatggaagaagttatcaactcttttacttgtcgatttcctggctttgaagctttaacacgatcattgggtagtgaaattcaatggatcttccc |
10507417 |
T |
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| Q |
207 |
ttgctaagtcggtgtgttgatatttcatatttgaattaataaaccactaagcatttacttatttattgttattttatacataaacaacaatgcatgccta |
306 |
Q |
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| T |
10507418 |
ttgctaagtcggtgtgttgata-ttcatatttgaattaataaaccactaagcatttactgatttattgttattttatacataaacaacaatgcatgccta |
10507516 |
T |
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| Q |
307 |
gctattcttcttgcagaaatatggtaacctgaactccaa |
345 |
Q |
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| T |
10507517 |
gctattcttctagcagaaatatggtaacctgaactccaa |
10507555 |
T |
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