View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8548A_low_69 (Length: 351)

Name: NF8548A_low_69
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8548A_low_69
NF8548A_low_69
[»] chr4 (10 HSPs)
chr4 (178-333)||(37179999-37180154)
chr4 (178-333)||(37181583-37181738)
chr4 (178-333)||(37189700-37189855)
chr4 (182-333)||(37187682-37187833)
chr4 (20-113)||(37180222-37180315)
chr4 (20-113)||(37189539-37189632)
chr4 (182-230)||(38704220-38704268)
chr4 (43-113)||(37181445-37181515)
chr4 (27-113)||(37187902-37187988)
chr4 (43-113)||(38704295-38704369)
[»] chr5 (2 HSPs)
chr5 (200-318)||(27096701-27096816)
chr5 (200-318)||(27103004-27103119)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 8e-83; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 178 - 333
Target Start/End: Complemental strand, 37180154 - 37179999
Alignment:
Q  178 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180154 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 37180055  T
Q  278 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcacttc 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180054 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcacttc 37179999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 178 - 333
Target Start/End: Original strand, 37181583 - 37181738
Alignment:
Q  178 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181583 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 37181682  T
Q  278 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcacttc 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181683 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcacttc 37181738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 178 - 333
Target Start/End: Original strand, 37189700 - 37189855
Alignment:
Q  178 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189700 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 37189799  T
Q  278 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcacttc 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189800 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcacttc 37189855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 182 - 333
Target Start/End: Complemental strand, 37187833 - 37187682
Alignment:
Q  182 ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaa 281  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||    
T  37187833 ccttcaattccaaatatgcctcagggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttcctagctttcctacaa 37187734  T
Q  282 atattccaacaattccatctctcaacattccaccattgccagcagtcacttc 333  Q
    || |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37187733 attttccaacaattccatctctcaacattccaccattgccagcagccacttc 37187682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 37180315 - 37180222
Alignment:
Q  20 atcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgggacaatatcaaacatgagcctagaagctcgtcatcttt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  37180315 atcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttt 37180222  T

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Target: chr4; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 37189539 - 37189632
Alignment:
Q  20 atcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgggacaatatcaaacatgagcctagaagctcgtcatcttt 113  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  37189539 atcaaactatcaatggcaatattcaaatccttgatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttt 37189632  T

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Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 38704268 - 38704220
Alignment:
Q  182 ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38704268 ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta 38704220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 37181445 - 37181515
Alignment:
Q  43 caaatccttcatcacaactttacttctagttgggacaatatcaaacatgagcctagaagctcgtcatcttt 113  Q
    ||||||||||||  ||||||||||||| ||||  ||||| |||| |||||||||||||||||| |||||||    
T  37181445 caaatccttcattgcaactttacttcttgttgtcacaatgtcaagcatgagcctagaagctcgccatcttt 37181515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 37187988 - 37187902
Alignment:
Q  27 tatcaatggcaatattcaaatccttcatcacaactttacttctagttgggacaatatcaaacatgagcctagaagctcgtcatcttt 113  Q
    |||||||||||  |  |||||||||||||| | |||||||||| |||| ||| || |||| |||||||||||||||||| |||||||    
T  37187988 tatcaatggcatcaagcaaatccttcatcatagctttacttcttgttgtgaccatgtcaagcatgagcctagaagctcgccatcttt 37187902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 38704369 - 38704295
Alignment:
Q  43 caaatccttcatcacaactt----tacttctagttgggacaatatcaaacatgagcctagaagctcgtcatcttt 113  Q
    ||||||||| ||||||||||    ||||||| |||| |||||| |||| ||||| ||||||||||||||||||||    
T  38704369 caaatccttaatcacaacttaatttacttcttgttgtgacaatgtcaagcatgaacctagaagctcgtcatcttt 38704295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 200 - 318
Target Start/End: Original strand, 27096701 - 27096816
Alignment:
Q  200 cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat 299  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||  ||||||| ||   ||||||| ||||||    
T  27096701 cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccaacacttccat 27096797  T
Q  300 ctctcaacattccaccatt 318  Q
    |||||||| ||||||||||    
T  27096798 ctctcaactttccaccatt 27096816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 318
Target Start/End: Original strand, 27103004 - 27103119
Alignment:
Q  200 cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat 299  Q
    |||||||| ||| |||||||||||||||| ||||||||  ||||||| |||||||||||||||||||| ||  |||| || ||   ||||||| ||||||    
T  27103004 cctcaaggtaatgttcctccattgcctaccatcccttcagtgcctaagctcactatgccaccacttcctagcattccaaccaa---tccaacacttccat 27103100  T
Q  300 ctctcaacattccaccatt 318  Q
    |||||||| ||||||||||    
T  27103101 ctctcaactttccaccatt 27103119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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