View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_72 (Length: 349)
Name: NF8548A_low_72
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 160 - 345
Target Start/End: Complemental strand, 29486634 - 29486455
Alignment:
| Q |
160 |
gacctcactttcatttttatattgaacaatatgtctttttcttttgaaccttacactttttaggtgcaaaaatttaatatgaaaatgaaaatttcctcta |
259 |
Q |
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| T |
29486634 |
gacctcactttcatttttatattgaacaatatgtctttt------gaaccttacactttttaggtgcaaaaatttaatatgaaaatgaaaatctcctcta |
29486541 |
T |
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| Q |
260 |
tcatgtgcatagtgtgtgtccacaaatgtttgggaggacaaagttttatttattttcttccttctcatttatggaacttggacgtg |
345 |
Q |
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| T |
29486540 |
tcatgtgcatagtgtgtgtccacaaatggttgggaggacaaagttttatttattttcttccttctcatttatggaacttggacgtg |
29486455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 29486832 - 29486663
Alignment:
| Q |
1 |
gagaagaaaacgaaaggtaaatccatggggaccacgaatggtgtaaagaggctaactatacatttgaaagacttaggtagagtcaatgtcttggccctat |
100 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29486832 |
gagatgaaaacgaaaggtaaatctatggggaccacgaatggtgtaaagaggctaactatacatttgaaagacttaggtagagtcaatgtcttgcccctat |
29486733 |
T |
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| Q |
101 |
agttacttaaaaataattgcatgccaaataattaatatccatttttaaaaaagactagagacctcactttc |
171 |
Q |
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| T |
29486732 |
agttacttaaaaataattgcatgccaaataattaatatccattttta-aaaagactagagacctcactttc |
29486663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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