View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_73 (Length: 349)
Name: NF8548A_low_73
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_73 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 20 - 345
Target Start/End: Original strand, 2730465 - 2730790
Alignment:
| Q |
20 |
catcaccctcaatcgaactaccttcaccgttgttcctccgcccattcatccaccgtaaatcttcttccttcacccatatcttgtaccttttacctacaat |
119 |
Q |
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| T |
2730465 |
catcaccctcaatcgaactaccttcactgttgttcctccgcccattcatccaccgtaaatcttcttccttcacccatatcttgtaccttatacctacaat |
2730564 |
T |
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| Q |
120 |
tgaaatggtgaaagatccacctatcaaccccgttttaagagaaaaacactaggatctatgccacatctagatggttcctttgaattgtatcaccgtaaaa |
219 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2730565 |
tgaaatggtgaaagatccacctattaaccccattttaagagaaaaacactaggatctatgccacatctagatggttcctttgaattgtatcactgtaaaa |
2730664 |
T |
|
| Q |
220 |
tctatgaattcactgaactttgaatcaagaagcttgaagaacccttcctctcatgcatgaagggggattccaaacacttgaagccatactcttctcctcc |
319 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2730665 |
tctatgaattctctgaactttgaatcaagaaggttgaagaacccttcctctcatgcatgaagggggattccaaacacttgaagccatactcttctcctcc |
2730764 |
T |
|
| Q |
320 |
ttgccactctctctcgagaccatttt |
345 |
Q |
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|||||||| ||||||||||||||||| |
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| T |
2730765 |
ttgccactttctctcgagaccatttt |
2730790 |
T |
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