View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_78 (Length: 342)
Name: NF8548A_low_78
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_78 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 31133937 - 31133807
Alignment:
| Q |
1 |
tttgttttctaaactcacagtggtgtggaataagccaagttttgttttcacgaaatagaagaaggaagacaaggaatgattaaggaatcatgtatgtaac |
100 |
Q |
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| T |
31133937 |
tttgttttctaaactcacagtggtgtggaataagccaacttttgttttcacgaaatagaagaaggaagacaaggaatgattaaggaatca----tgtaac |
31133842 |
T |
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| Q |
101 |
tcgtaagtaaatagtggattggagaatgtaatctc |
135 |
Q |
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| T |
31133841 |
tcataagtaaatagtggattggagaatgtaatctc |
31133807 |
T |
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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 308
Target Start/End: Complemental strand, 31133768 - 31133640
Alignment:
| Q |
174 |
agttgactatttcagacgtatatatgccgcctcctgaaaaagaaataaaaaagagagaatggannnnnnnnnnnngtttgtttgttgtctatttctttca |
273 |
Q |
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| T |
31133768 |
agttgactatttcagacgtatatat---gcctcctgaaaaagaaataaaaaataaaga----aaaaaaaaattatgtttgtttgttgtctatttgtttca |
31133676 |
T |
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| Q |
274 |
tagcgtag-gtgtgtttgatttcctgtttgcaatat |
308 |
Q |
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| T |
31133675 |
tagcgcagtgtgtgtttgatttcctgtttgcaatat |
31133640 |
T |
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