View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8548A_low_8 (Length: 519)

Name: NF8548A_low_8
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8548A_low_8
NF8548A_low_8
[»] chr4 (4 HSPs)
chr4 (21-317)||(22336028-22336327)
chr4 (22-138)||(22321811-22321927)
chr4 (30-128)||(22049938-22050036)
chr4 (35-84)||(22200229-22200278)
[»] chr7 (3 HSPs)
chr7 (331-509)||(21469039-21469217)
chr7 (31-133)||(23392604-23392706)
chr7 (54-146)||(23396017-23396109)
[»] chr2 (2 HSPs)
chr2 (26-103)||(33851546-33851623)
chr2 (22-132)||(19898382-19898492)
[»] scaffold0512 (2 HSPs)
scaffold0512 (109-165)||(10651-10707)
scaffold0512 (30-84)||(10750-10804)
[»] chr6 (1 HSPs)
chr6 (28-96)||(18736670-18736738)
[»] chr1 (1 HSPs)
chr1 (30-138)||(9883535-9883643)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 21 - 317
Target Start/End: Original strand, 22336028 - 22336327
Alignment:
Q  21 taaaggtgaaaaaatatgactcaaattctcttatttgttcatgctttgattagctttctttctctacttcttattgtaactaatagtggtatgttatttt 120  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22336028 taaaggcgaaaaaatatgactcaaattctcttatttgttcatgttttgattagctttctttctctacttcttattgtaactaatagtggtatgttatttt 22336127  T
Q  121 tcacaccattttctaattaatcttattcacaatattttatcaccttttggcttttagtaacattatttttcttc----acattgcagtcgaaattcccga 216  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||  |||||||     |||||||||| |||||||| ||    
T  22336128 tcacaccattttctaattaatcttattcacgatattttatcatcttttgg-ttttagtaacatttattttcttatttgacattgcagttgaaattcctga 22336226  T
Q  217 aactccttgtgttagtgacgatgagtgtccatattataatccatctctttatgcgaggtgcattgatggattttgtacgttgtttttgtcctaagtatat 316  Q
    |||||||||||  ||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22336227 aactccttgtgagagtgacgctgaatgtccatattatagtccatctctttatgcgaggtgcattgatggattttgtacgttgtttttgtcctaagtatat 22336326  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 22321811 - 22321927
Alignment:
Q  22 aaaggtgaaaaaatatgactcaaattctcttatttgttcatgctttgattagctttctttctctacttcttattgtaactaatagtggtatgttattttt 121  Q
    ||||| ||||||||||| ||||||||||||| |||| | ||| ||| || | || | ||||| || ||||| ||||||| ||| ||||||||| ||||||    
T  22321811 aaaggagaaaaaatatggctcaaattctcttgtttgcttatgttttcatcatctctatttctttatttcttgttgtaaccaatggtggtatgtcattttt 22321910  T
Q  122 cacaccattttctaatt 138  Q
    || ||||||||||||||    
T  22321911 cataccattttctaatt 22321927  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 22050036 - 22049938
Alignment:
Q  30 aaaaatatgactcaaattctcttatttgttcatgctttgattagctttctttctctacttcttattgtaactaatagtggtatgttatttttcacacca 128  Q
    ||||||||| ||||||||||| | ||| || ||| |||||| | |||||||||  || || |||||||||| ||| |||||||||   |||||||||||    
T  22050036 aaaaatatggctcaaattctcatgtttatttatgatttgatcatctttctttccatatttattattgtaaccaatggtggtatgtctcttttcacacca 22049938  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 22200229 - 22200278
Alignment:
Q  35 tatgactcaaattctcttatttgttcatgctttgattagctttctttctc 84  Q
    |||| ||||||||| ||||| |||| |||||||||||| |||||||||||    
T  22200229 tatggctcaaattcacttatgtgtttatgctttgattatctttctttctc 22200278  T

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Target: chr7 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 331 - 509
Target Start/End: Complemental strand, 21469217 - 21469039
Alignment:
Q  331 cgaccacatctttcattgtcggtctatcatctggacttggagttacacataacaaagcaacacctaaagtctgcaacatttcttcaatttcggattctgg 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  21469217 cgaccacatctttcattgtcggtctatcatctggacttggagttacacataacaaagcaacacctaaagtctgcaacatttcttcgatttcagattctgg 21469118  T
Q  431 ccttgctcttaagctttcatcgagcacttcaactccacctcttttttgtctaacccaatcaacaatgtgatgtccatct 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21469117 ccttgctcttaagctttcatcgagcacttcaactccacctcttttttgtctaacccaatcaacaatgtgaagtccatct 21469039  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 23392604 - 23392706
Alignment:
Q  31 aaaatatgactcaaattctcttatttgttcatgctttgattagctttctttctctacttcttattgtaactaatagtggtatgttatttttcacaccatt 130  Q
    ||||||||||||||||||||   ||| || |  |||| || | ||||||||||||| ||||| ||| ||| || |||||||||| || ||||||||||||    
T  23392604 aaaatatgactcaaattctcaagtttatttacactttaatcatctttctttctctatttcttgttgaaaccaacagtggtatgtcatctttcacaccatt 23392703  T
Q  131 ttc 133  Q
    |||    
T  23392704 ttc 23392706  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 23396109 - 23396017
Alignment:
Q  54 tttgttcatgctttgattagctttctttctctacttcttattgtaactaatagtggtatgttatttttcacaccattttctaattaatcttat 146  Q
    |||||| |||||||||||   |||||||||||| || ||||| |||  ||| ||||||||| ||||||| || ||||| |||||| |||||||    
T  23396109 tttgtttatgctttgattttatttctttctctattttttattctaataaatggtggtatgtaatttttcccaacatttactaatttatcttat 23396017  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 33851546 - 33851623
Alignment:
Q  26 gtgaaaaaatatgactcaaattctcttatttgttcatgctttgattagctttctttctctacttcttattgtaactaa 103  Q
    ||||||||||||| ||||||||||| | ||  || ||| |||||| | ||||||||||||| ||||| ||||||||||    
T  33851546 gtgaaaaaatatggctcaaattctcatgttcatttatgttttgatcatctttctttctctatttcttgttgtaactaa 33851623  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 19898492 - 19898382
Alignment:
Q  22 aaaggtgaaaaaatatgactcaaattctcttatttgttcatgctttgattagctttctttctctacttcttattgta--actaatagtggtatgttattt 119  Q
    ||||| ||||||||||| ||||||||||||| | |||| |||||||||| | | || |||||| |  |||| |||||  ||||| |  ||||||| ||||    
T  19898492 aaaggagaaaaaatatggctcaaattctcttttatgtttatgctttgatcatccttttttctccatctcttgttgtaccactaaaa--ggtatgtcattt 19898395  T
Q  120 ttcacaccatttt 132  Q
    |||||||||||||    
T  19898394 ttcacaccatttt 19898382  T

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Target: scaffold0512 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 10707 - 10651
Alignment:
Q  109 gtatgttatttttcacaccattttctaattaatcttattcacaatattttatcacct 165  Q
    |||||| ||||||||||||||||| ||||  ||||||| |||| |||||||||||||    
T  10707 gtatgtcatttttcacaccattttataatctatcttatacacagtattttatcacct 10651  T

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Target: scaffold0512; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 10804 - 10750
Alignment:
Q  30 aaaaatatgactcaaattctcttatttgttcatgctttgattagctttctttctc 84  Q
    ||||||||| |||| |||||| | |||||| |||||||||||| |||||||||||    
T  10804 aaaaatatggctcacattctcatgtttgtttatgctttgattatctttctttctc 10750  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 18736670 - 18736738
Alignment:
Q  28 gaaaaaatatgactcaaattctcttatttgttcatgctttgattagctttctttctctacttcttattg 96  Q
    ||||||||||| ||||| ||||| |||||||| |||||||||| | |||||||| || | |||||||||    
T  18736670 gaaaaaatatggctcaatttctcatatttgtttatgctttgatcatctttctttttccatttcttattg 18736738  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 9883643 - 9883535
Alignment:
Q  30 aaaaatatgactcaaattctcttatttgttcatgctttgattagctttctttctctacttcttattgtaactaatagtggtatgttatttttcacaccat 129  Q
    ||||||||| |||||||||   | |||||| ||||||| || | |||||| |||| | ||||| ||||||| | ||   |||||| |||||||||| |||    
T  9883643 aaaaatatgtctcaaattcgtgtgtttgtttatgctttaatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcatttttcacatcat 9883544  T
Q  130 tttctaatt 138  Q
    |||||||||    
T  9883543 tttctaatt 9883535  T

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