View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8548A_low_84 (Length: 334)

Name: NF8548A_low_84
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8548A_low_84
NF8548A_low_84
[»] chr2 (2 HSPs)
chr2 (1-315)||(1813263-1813577)
chr2 (220-253)||(6626745-6626778)
[»] chr7 (3 HSPs)
chr7 (220-315)||(38622843-38622938)
chr7 (213-262)||(28976435-28976484)
chr7 (283-315)||(28976336-28976368)
[»] chr4 (2 HSPs)
chr4 (213-315)||(33714191-33714293)
chr4 (220-281)||(26275538-26275599)
[»] chr8 (2 HSPs)
chr8 (220-288)||(1310132-1310200)
chr8 (283-315)||(18899950-18899982)
[»] chr6 (1 HSPs)
chr6 (220-287)||(430983-431050)
[»] chr3 (1 HSPs)
chr3 (283-320)||(7877850-7877887)
[»] chr5 (1 HSPs)
chr5 (220-300)||(8928378-8928458)


Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 1813263 - 1813577
Alignment:
Q  1 ggtacaaaattcgagtatgtaaaagatactatagtgtgccatgattatcaggagataaaagtccaagagagtacacaggtgctaggtgttggtgcgatcc 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1813263 ggtacaaaattcgagtatgtaaaagatactacagtgtgccatgattatcaggagataaaagtccaagagagtacacaggtgctaggtgttggtgcgatcc 1813362  T
Q  101 ctcgttcaattcttgtcatcttgaaggatgaccttgttgatgttgttaaagctggagggactttcccctcaaactcagtgttgccaaatactagctagca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  1813363 ctcgttcaattcttgtcatcttgaaggatgaccttgttgatgttgttaaagctggaggtattttcccctcaaactcagtgttgccaaatactagctagca 1813462  T
Q  201 gtgttattgctcagtggagtttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcggttatagcactgttgtgtag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1813463 gtgttattgctcagtggagtttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcggttatagcactgttgtgtag 1813562  T
Q  301 tggaatttgaacaaa 315  Q
     ||||||||||||||    
T  1813563 cggaatttgaacaaa 1813577  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 253
Target Start/End: Complemental strand, 6626778 - 6626745
Alignment:
Q  220 tttgaacaaaccgctattgttccatgatacacta 253  Q
    |||||||||| |||||||||||||||||||||||    
T  6626778 tttgaacaaatcgctattgttccatgatacacta 6626745  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 315
Target Start/End: Complemental strand, 38622938 - 38622843
Alignment:
Q  220 tttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcggttatagcactgttgtgtagtggaatttgaacaaa 315  Q
    |||||| ||| || |||||||||||||||||||| |||| ||| ||  |||| || |||||| ||||||| |||||| ||| | ||||||||||||    
T  38622938 tttgaataaatcgatattgttccatgatacactatttagcacaaaatgttgtcaaatagcggctatagcattgttgtatagcgaaatttgaacaaa 38622843  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 28976484 - 28976435
Alignment:
Q  213 agtggagtttgaacaaaccgctattgttccatgatacactacttagtaca 262  Q
    |||||| ||| ||||||| |||||| ||||||||||||||| ||||||||    
T  28976484 agtggaatttaaacaaactgctatttttccatgatacactatttagtaca 28976435  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 28976368 - 28976336
Alignment:
Q  283 tatagcactgttgtgtagtggaatttgaacaaa 315  Q
    ||||||| |||||||||||||||||||||||||    
T  28976368 tatagcattgttgtgtagtggaatttgaacaaa 28976336  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 315
Target Start/End: Complemental strand, 33714293 - 33714191
Alignment:
Q  213 agtggagtttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcggttatagcactgttgtgtagtggaatttgaac 312  Q
    |||||| |||||||||| |||| |||||||| ||||  | | |||||||| || |||||||| |||  |||||| ||||| || |||| |||||||||||    
T  33714293 agtggaatttgaacaaatcgctgttgttccacgataagccatttagtacaaaatattgtgaaatagacgttataacactgatgcgtagcggaatttgaac 33714194  T
Q  313 aaa 315  Q
    |||    
T  33714193 aaa 33714191  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 281
Target Start/End: Complemental strand, 26275599 - 26275538
Alignment:
Q  220 tttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcgg 281  Q
    |||||||||| |||||||||||||  |||| ||| |||||||| || |||||||| ||||||    
T  26275599 tttgaacaaatcgctattgttccaaaatacgctatttagtacaaaatattgtgaaatagcgg 26275538  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 1310132 - 1310200
Alignment:
Q  220 tttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcggttatagc 288  Q
    ||||||||||  ||||||||||| |||||||||| ||||||||  | |||||||| |||||| ||||||    
T  1310132 tttgaacaaattgctattgttccttgatacactatttagtacaatatattgtgaaatagcggctatagc 1310200  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 18899982 - 18899950
Alignment:
Q  283 tatagcactgttgtgtagtggaatttgaacaaa 315  Q
    |||||||||||||||||| ||||||||||||||    
T  18899982 tatagcactgttgtgtagcggaatttgaacaaa 18899950  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 430983 - 431050
Alignment:
Q  220 tttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcggttatag 287  Q
    |||||||||| | |||||||||||| ||| ||||||||||||| || ||||| || |||||| |||||    
T  430983 tttgaacaaatcactattgttccattataaactacttagtacaaaatattgttaaatagcggctatag 431050  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 320
Target Start/End: Original strand, 7877850 - 7877887
Alignment:
Q  283 tatagcactgttgtgtagtggaatttgaacaaaacata 320  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  7877850 tatagcactgtagtgtagtggaatttgaacaaaccata 7877887  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 300
Target Start/End: Complemental strand, 8928458 - 8928378
Alignment:
Q  220 tttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcggttatagcactgttgtgtag 300  Q
    |||||||||| ||||||||||| ||||||| ||| |||||||| || ||| |||| || | | || | |||||||||||||    
T  8928458 tttgaacaaatcgctattgttcgatgatacgctatttagtacaaaatattctgaaataactgctacaacactgttgtgtag 8928378  T

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