View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_85 (Length: 330)
Name: NF8548A_low_85
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_85 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 11 - 330
Target Start/End: Complemental strand, 2838821 - 2838502
Alignment:
| Q |
11 |
atggacatcagacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaagg |
110 |
Q |
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| T |
2838821 |
atggaaatgagacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaagg |
2838722 |
T |
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| Q |
111 |
agaatctctttttggaaaaggaatttgaaagttataggccatcactttcatttgaaacttgtgatgatccgtcacaggcagaaagcatcgtatcaaatgt |
210 |
Q |
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| T |
2838721 |
agaatctctttttggaaaaggaacttgaaagttataggccatcactttcatttgaaacttgtgatgatccatcacaggcagaaagcatcgtatcaaatgt |
2838622 |
T |
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| Q |
211 |
gaagaaagattgcgctgatgcagaccatggagaagaggtggaggaaaacagtcaacacaaggatcaagtgtgcaatgatatgcatagatccttttatgat |
310 |
Q |
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| T |
2838621 |
gaagaaagattgcgctgatgcagaccatggagaagaggtggaggaaaacagtcaacacaaggatcaagcgtgcaatgatatgcatagatccttttatgat |
2838522 |
T |
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| Q |
311 |
actgagtctgatgttcttga |
330 |
Q |
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| T |
2838521 |
actgagtctgatgttcttga |
2838502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 2842922 - 2842784
Alignment:
| Q |
11 |
atggacatcagacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaagg |
110 |
Q |
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| T |
2842922 |
atggaaatgagacaatacgagaggttaattgaagaaagagtttcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaggg |
2842823 |
T |
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| Q |
111 |
agaatctctttttggaaaaggaatttgaaagttataggc |
149 |
Q |
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| T |
2842822 |
aaaatctttttttggaaaaggaacttgaaacttttaggc |
2842784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 330
Target Start/End: Complemental strand, 2842573 - 2842528
Alignment:
| Q |
285 |
atgatatgcatagatccttttatgatactgagtctgatgttcttga |
330 |
Q |
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| T |
2842573 |
atgatttgcatagctccttttatgatactgagtctgatgttcttga |
2842528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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