View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_9 (Length: 515)
Name: NF8548A_low_9
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 169 - 515
Target Start/End: Original strand, 31556693 - 31557039
Alignment:
| Q |
169 |
atacacaatccttgtaaaaagttttacaatgtcaacaattctctatcattcatttgtgtgattttagagacttgagatttgaattgtgttatttcatatt |
268 |
Q |
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| T |
31556693 |
atacacaatccttgtaaaaagttttacaatgtcaacaattctctatcattcatttgtgtgattttagagacttgagatttgaattgtgttatttcatatt |
31556792 |
T |
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| Q |
269 |
tgacaggaagagcatgagcagataagagcaaggagtgagcaagaggcagcactggaatggacagattacaagtcaatgacatttactcaatgtgtaagca |
368 |
Q |
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| T |
31556793 |
tgacaggaagagcatgagcagataagagcaaggagtgagccagaggcagcactggaatggacagattacaagtcaatgacatttactcaatgtgtaagca |
31556892 |
T |
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| Q |
369 |
tataacacagacttaatttatatgcagtgacaccacacttttaatcaatcataaccgattgggctatgcaggttgtgaatgagaccttaagggttgcaaa |
468 |
Q |
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| T |
31556893 |
tataacacagacttaatttatatgcagtgacaccacacttttaatcaatcataaccgattgggctatgcaggttgtgaatgagaccttaagggttgcaaa |
31556992 |
T |
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| Q |
469 |
cataattggtgccatatttaggagaacaaccacagacatcgacataa |
515 |
Q |
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| T |
31556993 |
cataattggtgccatatttaggagaacaaccacagacatcgacataa |
31557039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 31556565 - 31556682
Alignment:
| Q |
18 |
tcacatgtcggttttgtgagttgtgtgagaccctactacgatttctaaaactctaggtcatattagttctctacaattacattatccaaaactcaatcat |
117 |
Q |
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| T |
31556565 |
tcacatgtcggttttgtgagttgtgtgagaccctactacgatttctaaaactctaggtcatattagttctctacaattacattatccaaaactcaatcat |
31556664 |
T |
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| Q |
118 |
attttacaaaaagtttga |
135 |
Q |
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| T |
31556665 |
attttacaaaaagtttga |
31556682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 432 - 508
Target Start/End: Original strand, 35478767 - 35478843
Alignment:
| Q |
432 |
ctatgcaggttgtgaatgagaccttaagggttgcaaacataattggtgccatatttaggagaacaaccacagacatc |
508 |
Q |
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| T |
35478767 |
ctatgtaggttgtgaatgagactttaaggatggcaaacataattggtgggatatttaggagagcaatgacagacatc |
35478843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 366
Target Start/End: Original strand, 35478613 - 35478658
Alignment:
| Q |
321 |
tggaatggacagattacaagtcaatgacatttactcaatgtgtaag |
366 |
Q |
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| T |
35478613 |
tggagtggacagattacaagtcaatggcatttactcaatgtgtaag |
35478658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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