View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_90 (Length: 322)
Name: NF8548A_low_90
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_90 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 7654247 - 7653938
Alignment:
| Q |
1 |
aacatttgaggacaaacagaactgaccaagtttatttttaatgcattttagtttcaaaataatatagtggcgatgcaatggaatgagtgtgatatatatt |
100 |
Q |
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| T |
7654247 |
aacatttgaggacaaacagaactgaccaagtttatttttaatgcattttagtttcaaaataatatagtggcgatgcaatggaatgagtgtgatatatatt |
7654148 |
T |
|
| Q |
101 |
ataaattgtgttgtgacatgagtaaggagacattttgtatacgagtgttagaaaagtaaatcatgattgctagccacatatactttcatattaatcatca |
200 |
Q |
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| T |
7654147 |
ataaattgtgttgtgacatgagtaaggagacattttgtatacgagtgttagaaaagtaaatcatgattgctaatcacatatactttcatattaatcatca |
7654048 |
T |
|
| Q |
201 |
atgtatcaatagtatccttcaagtgggtttcttgcacaagatggnnnnnnnnnnnnnnnnnnggtttctaatatgtttcttgcacaagaagtaatcctat |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7654047 |
atgtatcaataatatccttcaagtgggtttcttgcacaagatggttttcttttttactttttggtttctaatatgtttcttgcacaagaagtaatcctat |
7653948 |
T |
|
| Q |
301 |
tcgagatatt |
310 |
Q |
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|||||||||| |
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| T |
7653947 |
tcgagatatt |
7653938 |
T |
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