View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_92 (Length: 319)
Name: NF8548A_low_92
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_92 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 28 - 309
Target Start/End: Original strand, 31695984 - 31696265
Alignment:
| Q |
28 |
ggtggatggagagtagaggattatcattggaatcaagcaagagtttgggattggatggttgatgttgcaccttgaagaccatgttcccggatgcattggt |
127 |
Q |
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| T |
31695984 |
ggtggattgagaatagaggattatcattggaatcaagcaagagtttgggattgggtggttgatgttgcaccttgaagaccatgttcccggatgcattggt |
31696083 |
T |
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| Q |
128 |
gaactctagggtgccacgtggaatttgggcgtcttctttggaacagaagagatcgattgggatgtgttcatcttctgtgcctgtatattcccaatcttct |
227 |
Q |
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| T |
31696084 |
gaactctagggtgccacgtggaactcgggcgtcttctttggaacagaagagatcgattgggatgtgttcatcttctgtgcctgtatattcccaatcttct |
31696183 |
T |
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| Q |
228 |
gaagtttccacttccatttttgttaattgttttctatttctcttaacagatttaatccatcactgtaaataataatttactg |
309 |
Q |
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| T |
31696184 |
gaagtttccatttccatttttgttaattgttttctattcctcttaacagatttaatccatcagtgtaaataataatttactg |
31696265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 31689861 - 31690013
Alignment:
| Q |
72 |
ttgggattggatggttgatgttgcaccttgaagaccatgttcccggatgcattggtgaactctagggtgccacgtggaatttgggcgtcttctttggaac |
171 |
Q |
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| T |
31689861 |
ttgggatcgggtggttgacggtgcaccttgaagactatgttccccgatgcatctgtaaacgctaggatgccacgtggaactccggcgtgttttttggaac |
31689960 |
T |
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| Q |
172 |
agaagagatcgattgggatgtgttcatcttctgtgcctgtatattcccaatct |
224 |
Q |
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| T |
31689961 |
cgaaaagatcgattgggatgtgttgatcttcggtgcctgtgtactccaaatct |
31690013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 31689787 - 31689835
Alignment:
| Q |
25 |
gacggtggatggagagtagaggattatcattggaatcaagcaagagttt |
73 |
Q |
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| T |
31689787 |
gacggtggatggaaaacagaggattatcattggaatcaagcaagagttt |
31689835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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