View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8548A_low_98 (Length: 310)

Name: NF8548A_low_98
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8548A_low_98
NF8548A_low_98
[»] chr6 (2 HSPs)
chr6 (23-308)||(34444044-34444329)
chr6 (23-310)||(34437297-34437584)


Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 23 - 308
Target Start/End: Original strand, 34444044 - 34444329
Alignment:
Q  23 ttatctccgcgttggaacttagaccagttgatagttctatttataaaactgagttcggtgattctgcttcattgttacttttcaaaagatgggacattgg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34444044 ttatctccgcgttggaacttagaccagttgatagttctatttataaaactgagttcggtgattctgcttcattgttacttttcaaaagatgggacattgg 34444143  T
Q  123 ttcatttaatggaagtggtagatatcaagacgatgtttacgatagaatttggtttcctttgaattcctcttcatggaaatctataaacacttcttcaaaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34444144 ttcatttaatggaagtggtagatatcaagacgatgtttacgatagaatttggtttcctttgaattcctcttcatggaaatctataaacacttcttcaaaa 34444243  T
Q  223 attgatgttagtggagatggctataaggcaccgtttgaagttattagcaatgctgctacaccaaggaatgagaatgatagtatgga 308  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  34444244 attgatgttagtggagatggctataaagcaccgtttgaagttattagcaatgctgctacaccaaggaatgagaatgttagtttgga 34444329  T

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Target: chr6; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 23 - 310
Target Start/End: Original strand, 34437297 - 34437584
Alignment:
Q  23 ttatctccgcgttggaacttagaccagttgatagttctatttataaaactgagttcggtgattctgcttcattgttacttttcaaaagatgggacattgg 122  Q
    ||||||| || ||||||||||||||| ||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34437297 ttatctcagcattggaacttagaccaattgataactctatttataaaactgagtttggtgattctgcttcattgttacttttcaaaagatgggacattgg 34437396  T
Q  123 ttcatttaatggaagtggtagatatcaagacgatgtttacgatagaatttggtttcctttgaattcctcttcatggaaatctataaacacttcttcaaaa 222  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| | || |||||||||||||||||||||| |||||||||||||    
T  34437397 ttcatttaatggaagtggtagatatcaagatgatgtttatgatagaatttggtttcctcttaaatcctcttcatggaaatctataagcacttcttcaaaa 34437496  T
Q  223 attgatgttagtggagatggctataaggcaccgtttgaagttattagcaatgctgctacaccaaggaatgagaatgatagtatggaat 310  Q
    || |||||||||||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  34437497 atagatgttagtggagatggctataaaccaccatttgaagttattaggaatgctgctacaccaaggaatgagaatgatagtttggaat 34437584  T

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