View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548_high_4 (Length: 372)
Name: NF8548_high_4
Description: NF8548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 45099906 - 45099559
Alignment:
| Q |
1 |
agataaagaaatagatgtagaagaataagtaagaaagttaaaattggactgaatatgcatgcatggtggcaaaatgacatacctgatatgttttcttcac |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45099906 |
agataaataaatagatgtagaagaataagtaagaaagttaaaattggactgaatatgcatgcatggtggcaaaatgacatacctcatatgttttcttcac |
45099807 |
T |
|
| Q |
101 |
attgtgcctttcgtttccttccttttctttggaaatgtgaagcactaatactaacttctatacgatgcaattactattttattcagttgttttgaatatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45099806 |
attgtgcctttcgtttccttccttttctttggaaaa------cactaatactaacttctatacgatgcaattactattttattcagttgttttgaatatt |
45099713 |
T |
|
| Q |
201 |
aagttcaaacgggtttttgattatactattgcattggaccaacgtcaaatttgtagataaggaaactaccataaatcagttatagctggacattttttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |
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| T |
45099712 |
aagttcaaacgggtttttgattatactattgcattggaccaacgtcaaatttgtagataaggaaactaccataaatgagttatagatggacatttttgga |
45099613 |
T |
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| Q |
301 |
gagaaagaagggctaccaagtaccatatgagcaccaaaattttgtcttcaattc |
354 |
Q |
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| T |
45099612 |
gagaaagaagggctaccaagtaccatatgagcaccaaaattttgtcttcaattc |
45099559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 12228288 - 12228005
Alignment:
| Q |
1 |
agataaagaaatagatgtagaagaataagtaagaaagttaaaattggactgaatatgcatgcatggtggcaaaatgacatacctgatatgttttcttcac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12228288 |
agataaagaaatagatgtagaagaataagtaagaaagttaaaattggactgaatatgcatgcatggtggtaaaatgacatacctgatatgttttcttcac |
12228189 |
T |
|
| Q |
101 |
attgtgcctttcgtttccttccttttctttggaaatgtgaagcactaatactaacttctatacgatgcaattactattttattcagttgttttgaatatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
12228188 |
attgtgcctttcgtttccttccttttctttggaaatgtgaagcactaatactaacttcaatacaatgcaattactattttattcagttgttttgaatatt |
12228089 |
T |
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| Q |
201 |
aagttcaaacgggtttttgattatactattgcattggaccaacgtcaaatttgtagataaggaaactaccataaatcagttata |
284 |
Q |
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| T |
12228088 |
atgttcaaacgggtttttaattatactattgcattggaccggcgtcaaatttgtagataaggaaactaccataaatcagttata |
12228005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 35167595 - 35167742
Alignment:
| Q |
1 |
agataaagaaatagatg---tagaagaataagtaagaaagttaaaattggactgaatatgcatgcatggtggcaaaatgacatacctgatatgttttctt |
97 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
35167595 |
agataaagaaataggtgatatagaagaataagtaagaaagttaaaattggagtgaatatgcatgcatggtggcaaaatgaactacctgatatg-tttctc |
35167693 |
T |
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| Q |
98 |
cacattgtgcctttcgtttccttccttttctttggaaatgtgaagcact |
146 |
Q |
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| T |
35167694 |
cacattgtgcatttcgtttccttccttttcgttggaaatgtgaagcact |
35167742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 35168102 - 35168168
Alignment:
| Q |
246 |
caaatttgtagataaggaaactaccataaatcagttatagctggacattttttg-agagaaagaagg |
311 |
Q |
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||||||||||||||||||||||||||||||||| ||||| | || ||||||| | |||||||||||| |
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| T |
35168102 |
caaatttgtagataaggaaactaccataaatcaattataacagggcatttttggaagagaaagaagg |
35168168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 17904421 - 17904542
Alignment:
| Q |
41 |
aaattggactgaatatgcatgcatggtggcaaaatgacatacctgatatgttttcttcacattgtgcctttcgtttccttccttttctttggaaat---g |
137 |
Q |
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|||||| | ||||||||||| |||||| ||||||||| |||| | |||||| || |||||| |||||||| |||||||||||||||||| || | |
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| T |
17904421 |
aaattgcagtgaatatgcatacatggttgcaaaatgaactaccacaaatgttt-ctccacattttgcctttcacttccttccttttctttggctatgtgg |
17904519 |
T |
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| Q |
138 |
tgaagcactaatactaacttcta |
160 |
Q |
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|||| |||||||| ||||||||| |
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| T |
17904520 |
tgaaacactaatattaacttcta |
17904542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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