View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8548_low_1 (Length: 765)

Name: NF8548_low_1
Description: NF8548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8548_low_1
NF8548_low_1
[»] chr5 (4 HSPs)
chr5 (98-659)||(2394126-2394709)
chr5 (60-106)||(2393579-2393625)
chr5 (597-699)||(43379444-43379546)
chr5 (597-690)||(43378579-43378672)
[»] chr8 (5 HSPs)
chr8 (597-744)||(28584299-28584446)
chr8 (597-689)||(39308675-39308767)
chr8 (597-689)||(39309638-39309730)
chr8 (592-693)||(13017749-13017850)
chr8 (650-699)||(42578769-42578818)
[»] chr6 (2 HSPs)
chr6 (592-674)||(18065721-18065803)
chr6 (638-694)||(13207394-13207450)
[»] chr3 (4 HSPs)
chr3 (592-674)||(34936717-34936799)
chr3 (597-699)||(39232258-39232360)
chr3 (618-712)||(17057131-17057224)
chr3 (619-699)||(39229431-39229511)
[»] chr7 (6 HSPs)
chr7 (650-720)||(35753004-35753073)
chr7 (597-696)||(18332809-18332908)
chr7 (618-712)||(43492967-43493060)
chr7 (638-694)||(42253041-42253096)
chr7 (617-712)||(41347118-41347212)
chr7 (650-699)||(25871763-25871812)
[»] chr2 (1 HSPs)
chr2 (597-690)||(34229043-34229136)
[»] scaffold0151 (1 HSPs)
scaffold0151 (642-705)||(20792-20855)
[»] chr4 (1 HSPs)
chr4 (642-690)||(24484835-24484883)
[»] chr1 (1 HSPs)
chr1 (592-693)||(46178127-46178228)


Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 98 - 659
Target Start/End: Original strand, 2394126 - 2394709
Alignment:
Q  98 ttaattaatttaataacatttgcacattaaaatgaaacaacaaaaatacataatagaaaaggtacaatataagaaaatggttattattaggacttggagt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2394126 ttaattaatttaataacatttgcacattaaaatgaaacaacaaaaatacataatagaaaaggtacaatataagaaaatggttattattaggacttggagt 2394225  T
Q  198 agtcttttgtaattgttttcatttgcagactgaagcgtagagaacactgtccttccttaattacactagctttttgaggaacttcccggaagttgcttcc 297  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||    ||||| ||||||||||||||||| ||||||||||||||||||    
T  2394226 agtcttttgtaactgttttcatttgcagacggaagcgtagagaacactgtcctt----aattatactagctttttgaggaatttcccggaagttgcttcc 2394321  T
Q  298 aatccagcaacttttgtcgttctacattacgatggaattataatgatacaaaagtcagagcgtacaaatgtatgaaacttcgcaaatatactaatatact 397  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2394322 aatccaacaacttttgtcgttctaaattacgatggaattataatgatacaaaagtcagagcgtacaaatgtatgaaacttcgcaaatatactaatatact 2394421  T
Q  398 gttccgaatgcaaaggcttggaaagatag-----------------cttccgatagactatttccaaacaaaaagagtaaaaaatagcttattggaaatt 480  Q
    |||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2394422 gttccgaatgcaaaggcttggaaagatagcttatcggaagcgataacttccgatagactatttccaaacaaaaagagtaaaaaatagcttattggaaatt 2394521  T
Q  481 atcttccgataaagactggcttcagagcaacactggagagagcaattttcaaatgtttcagcttaaaacattccgtatgtgacatgtttcagcaattttc 580  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2394522 atcttccgataaagactggcttcagagcaacactggagagagcaattttcaaatgtttcagcttaaaacattccgtatgtgacatgtttcagcaattttc 2394621  T
Q  581 -------aattttc---ccgggtgcgtctttgctccatttaagagacctccatttatccctgtttgcctcttagatatgtgacatgtgg 659  Q
           |||||||   ||||  | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2394622 aacttttaattttcattccggaggtgt-tttgctccatttaagagacctccatttatccctgtttgcctcttagatatgtgacatgtgg 2394709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 2393579 - 2393625
Alignment:
Q  60 agttttggacttaactcaaactttataaactatcataattaattaat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2393579 agttttggacttaactcaaactttataaactatcataattaattaat 2393625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 597 - 699
Target Start/End: Complemental strand, 43379546 - 43379444
Alignment:
Q  597 tctttgctccatttaagagacctccatttatccctgtttgcctcttagatatgtgacatgtggcaaaaataaaaccaagggccgagattaaaagatttag 696  Q
    ||||||||||||||| ||   |||||||||||||  |    ||||||||| ||||||||||||||||||||||| ||||||  | ||||||||| ||| |    
T  43379546 tctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtggcaaaaataaaagcaagggttgggattaaaaggtttgg 43379447  T
Q  697 aaa 699  Q
    |||    
T  43379446 aaa 43379444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 690
Target Start/End: Original strand, 43378579 - 43378672
Alignment:
Q  597 tctttgctccatttaagagacctccatttatccctgtttgcctcttagatatgtgacatgtggcaaaaataaaaccaagggccgagattaaaag 690  Q
    ||||||||||||||| ||   ||||||||| |||  | |  ||||||||| ||||||| ||||||||||||||| ||||||  |||||||||||    
T  43378579 tctttgctccatttatgaaggctccatttaccccattctagctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaag 43378672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 4e-68; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 597 - 744
Target Start/End: Complemental strand, 28584446 - 28584299
Alignment:
Q  597 tctttgctccatttaagagacctccatttatccctgtttgcctcttagatatgtgacatgtggcaaaaataaaaccaagggccgagattaaaagatttag 696  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  28584446 tctttgctccatttaagagacctccatttatccctgtttgcctcttagatatgtgacacgtggcaaaaataaaaccaagggccgagattaaaagatttat 28584347  T
Q  697 aaacaaacacttgttttataaataagaaaagtcatgcgagtttcatct 744  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||    
T  28584346 aaacaaacacttgttttataaataagaaaagtcatgcgcatttcatct 28584299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 689
Target Start/End: Original strand, 39308675 - 39308767
Alignment:
Q  597 tctttgctccatttaagagacctccatttatccctgtttgcctcttagatatgtgacatgtggcaaaaataaaaccaagggccgagattaaaa 689  Q
    ||||||||||||||| || |||||||||||||||| ||  |||| |||||   ||||||||||||||| |||||  |||||| | ||||||||    
T  39308675 tctttgctccatttaggaaacctccatttatcccttttcacctcatagatgactgacatgtggcaaaactaaaatgaagggctgggattaaaa 39308767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 689
Target Start/End: Complemental strand, 39309730 - 39309638
Alignment:
Q  597 tctttgctccatttaagagacctccatttatccctgtttgcctcttagatatgtgacatgtggcaaaaataaaaccaagggccgagattaaaa 689  Q
    ||||||||||||||| || |||||||||||||||| ||  |||| |||||   |||||||||||||||  ||||  |||||| ||||||||||    
T  39309730 tctttgctccatttaggaaacctccatttatcccttttcacctcatagatgattgacatgtggcaaaacaaaaatgaagggctgagattaaaa 39309638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 693
Target Start/End: Complemental strand, 13017850 - 13017749
Alignment:
Q  592 gtgcgtctttgctccatttaagagacctccatttatccctgtttgcctcttagatatgtgacatgtggcaaaaataaaaccaagggccgagattaaaaga 691  Q
    |||| ||||||||||||||| |||| |||||||||  ||||||  |  | ||||| | |||||||||||||||| |||| ||| |||  |||||||||||    
T  13017850 gtgcatctttgctccatttatgagagctccatttacacctgttcactgcatagatttatgacatgtggcaaaaacaaaatcaaaggctcagattaaaaga 13017751  T
Q  692 tt 693  Q
    ||    
T  13017750 tt 13017749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 699
Target Start/End: Original strand, 42578769 - 42578818
Alignment:
Q  650 tgacatgtggcaaaaataaaaccaagggccgagattaaaagatttagaaa 699  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||||| ||||    
T  42578769 tgacatgtggcaaaaataaaatcaatggctgagattaaaagatttggaaa 42578818  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 592 - 674
Target Start/End: Original strand, 18065721 - 18065803
Alignment:
Q  592 gtgcgtctttgctccatttaagagacctccatttatccctgtttgcctcttagatatgtgacatgtggcaaaaataaaaccaa 674  Q
    |||| |||||||||||||||  | |||||||||||||||| ||| | |  ||||||| |||||||||||||||||||||||||    
T  18065721 gtgcatctttgctccatttaccaaacctccatttatccctttttactttatagatatatgacatgtggcaaaaataaaaccaa 18065803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 694
Target Start/End: Original strand, 13207394 - 13207450
Alignment:
Q  638 ctcttagatatgtgacatgtggcaaaaataaaaccaagggccgagattaaaagattt 694  Q
    ||||||||| ||||||| ||||||||||||||| ||||||  |||||||||||||||    
T  13207394 ctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaagattt 13207450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 592 - 674
Target Start/End: Original strand, 34936717 - 34936799
Alignment:
Q  592 gtgcgtctttgctccatttaagagacctccatttatccctgtttgcctcttagatatgtgacatgtggcaaaaataaaaccaa 674  Q
    |||| |||||||||||||||  | |||||||||||||||| ||  | || ||||| |||||||||||||||||||||||||||    
T  34936717 gtgcatctttgctccatttaccatacctccatttatcccttttcacttcatagatttgtgacatgtggcaaaaataaaaccaa 34936799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 597 - 699
Target Start/End: Complemental strand, 39232360 - 39232258
Alignment:
Q  597 tctttgctccatttaagaga-cctccatttatccctgtttgcctcttagatatgtgacatgtggcaaaaataaaaccaagggccgagattaaaagattta 695  Q
    ||||||||||||||| |||| ||||||||||  ||| ||| | |||| ||| |||||||||| || |||||| |||||| ||||||||||||||| ||||    
T  39232360 tctttgctccattta-gagagcctccatttactcctttttacttcttggatgtgtgacatgttgctaaaatagaaccaaaggccgagattaaaaggttta 39232262  T
Q  696 gaaa 699  Q
    ||||    
T  39232261 gaaa 39232258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 618 - 712
Target Start/End: Original strand, 17057131 - 17057224
Alignment:
Q  618 ctccatttatccctgtttgcctcttagatatgtgacatgtggcaaaaataaaaccaagggccgagattaaaagatttagaaacaaacacttgttt 712  Q
    ||||||||| |||||||  | |||||||| ||||||| ||||||||||| ||||||| ||  ||||||||||| ||| |||| ||||||||||||    
T  17057131 ctccatttacccctgttcacttcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaaggtttggaaa-aaacacttgttt 17057224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 699
Target Start/End: Original strand, 39229431 - 39229511
Alignment:
Q  619 tccatttatccctgtttgcctcttagatatgtgacatgtggcaaaaataaaaccaagggccgagattaaaagatttagaaa 699  Q
    ||||||||  ||| ||||| |||| ||| ||||||||||||| |||||| |||||| | | ||||||||||| ||||||||    
T  39229431 tccatttactcctttttgcttctttgatgtgtgacatgtggctaaaatagaaccaaagactgagattaaaaggtttagaaa 39229511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 650 - 720
Target Start/End: Complemental strand, 35753073 - 35753004
Alignment:
Q  650 tgacatgtggcaaaaataaaaccaagggccgagattaaaagatttagaaacaaacacttgttttataaata 720  Q
    ||||||||||||||||||||| ||| ||| | ||||||||||||| |||| |||||||||||| |||||||    
T  35753073 tgacatgtggcaaaaataaaatcaatggctgtgattaaaagatttggaaa-aaacacttgtttgataaata 35753004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 696
Target Start/End: Complemental strand, 18332908 - 18332809
Alignment:
Q  597 tctttgctccatttaagaga-cctccatttatccctgtttgcctcttagatatgtgacatgtggcaaaaataaaaccaagggccgagattaaaagattta 695  Q
    ||||||||||||||| |||| ||||||||||  | | ||||| |||| ||| ||||||||||||| |||||| |||||| | ||||||||||||| ||||    
T  18332908 tctttgctccattta-gagaacctccatttactcttttttgcttcttggatgtgtgacatgtggctaaaatagaaccaaagaccgagattaaaaggttta 18332810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 618 - 712
Target Start/End: Complemental strand, 43493060 - 43492967
Alignment:
Q  618 ctccatttatccctgtttgcctcttagatatgtgacatgtggcaaaaataaaaccaagggccgagattaaaagatttagaaacaaacacttgttt 712  Q
    ||||||||| |||||||  | |||||||| |||||||  |||||||||| ||||||| ||  ||||||||||| ||| |||| ||||||||||||    
T  43493060 ctccatttacccctgttcacttcttagatgtgtgacacatggcaaaaatgaaaccaacggttgagattaaaaggtttggaaa-aaacacttgttt 43492967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 638 - 694
Target Start/End: Complemental strand, 42253096 - 42253041
Alignment:
Q  638 ctcttagatatgtgacatgtggcaaaaataaaaccaagggccgagattaaaagattt 694  Q
    ||||||||| |||||||| || ||||||||||| ||||||| |||||||||||||||    
T  42253096 ctcttagatgtgtgacat-tgtcaaaaataaaaacaagggctgagattaaaagattt 42253041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 712
Target Start/End: Original strand, 41347118 - 41347212
Alignment:
Q  617 cctccatttatccctgtttgcctcttagatatgtgacatgtggcaaaaataaaaccaagggccgagattaaaagatttagaaacaaacacttgttt 712  Q
    |||||||||||||||||||   |  ||||| | |||||||||||||| || ||| ||||||| |||||||||| ||||| | | ||||||||||||    
T  41347118 cctccatttatccctgtttattttgtagatgtctgacatgtggcaaatattaaatcaagggctgagattaaaaaattta-acataaacacttgttt 41347212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 699
Target Start/End: Original strand, 25871763 - 25871812
Alignment:
Q  650 tgacatgtggcaaaaataaaaccaagggccgagattaaaagatttagaaa 699  Q
    |||||||||||||||||||||  |||||  | ||||||||||||||||||    
T  25871763 tgacatgtggcaaaaataaaattaagggttgggattaaaagatttagaaa 25871812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 597 - 690
Target Start/End: Complemental strand, 34229136 - 34229043
Alignment:
Q  597 tctttgctccatttaagagacctccatttatccctgtttgcctcttagatatgtgacatgtggcaaaaataaaaccaagggccgagattaaaag 690  Q
    ||||||||||||||||||  |||| ||||| |||  |||   || ||||| |||||||||||| |||||||||||||| ||| |||||||||||    
T  34229136 tctttgctccatttaagattcctcaatttaccccattttaagtcatagatgtgtgacatgtggaaaaaataaaaccaatggctgagattaaaag 34229043  T

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Target: scaffold0151 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 642 - 705
Target Start/End: Original strand, 20792 - 20855
Alignment:
Q  642 tagatatgtgacatgtggcaaaaataaaaccaagggccgagattaaaagatttagaaacaaaca 705  Q
    ||||| |||||||||||| |||||||||||||| ||| ||||||||||| ||| |||| |||||    
T  20792 tagatgtgtgacatgtggtaaaaataaaaccaatggctgagattaaaaggtttggaaaaaaaca 20855  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 642 - 690
Target Start/End: Original strand, 24484835 - 24484883
Alignment:
Q  642 tagatatgtgacatgtggcaaaaataaaaccaagggccgagattaaaag 690  Q
    ||||| |||||||||||| |||||||||||||| ||| |||||||||||    
T  24484835 tagatgtgtgacatgtggaaaaaataaaaccaatggctgagattaaaag 24484883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 693
Target Start/End: Complemental strand, 46178228 - 46178127
Alignment:
Q  592 gtgcgtctttgctccatttaagagacctccatttatccctgtttgcctcttagatatgtgacatgtggcaaaaataaaaccaagggccgagattaaaaga 691  Q
    |||| ||||||||||||||| |||| |||||||||  ||||||  |  | ||||| | ||||| |||||||||| |||| ||| |||  |||||||||||    
T  46178228 gtgcatctttgctccatttatgagagctccatttacacctgttcactgcatagatttatgacacgtggcaaaaacaaaatcaaaggctcagattaaaaga 46178129  T
Q  692 tt 693  Q
    ||    
T  46178128 tt 46178127  T

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