View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8548_low_10 (Length: 394)

Name: NF8548_low_10
Description: NF8548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8548_low_10
NF8548_low_10
[»] chr8 (7 HSPs)
chr8 (67-217)||(9530969-9531117)
chr8 (230-363)||(10756516-10756649)
chr8 (230-363)||(29739975-29740108)
chr8 (229-282)||(29739908-29739961)
chr8 (230-282)||(10756450-10756502)
chr8 (228-304)||(11128869-11128945)
chr8 (228-279)||(9565662-9565713)
[»] chr6 (8 HSPs)
chr6 (230-363)||(3962604-3962737)
chr6 (230-363)||(30780335-30780468)
chr6 (229-363)||(25054505-25054639)
chr6 (230-363)||(17193740-17193873)
chr6 (226-282)||(30780265-30780321)
chr6 (227-282)||(25054436-25054491)
chr6 (228-282)||(17193887-17193941)
chr6 (230-282)||(3962538-3962590)
[»] chr5 (7 HSPs)
chr5 (230-363)||(11772807-11772940)
chr5 (230-363)||(17534545-17534678)
chr5 (228-299)||(8881020-8881091)
chr5 (230-282)||(11772741-11772793)
chr5 (230-282)||(17534692-17534744)
chr5 (229-272)||(8881095-8881138)
chr5 (227-263)||(10510073-10510109)
[»] chr3 (5 HSPs)
chr3 (231-360)||(34630657-34630786)
chr3 (230-356)||(46905406-46905529)
chr3 (227-282)||(34630586-34630641)
chr3 (230-280)||(22899519-22899569)
chr3 (230-282)||(46906267-46906319)
[»] chr4 (2 HSPs)
chr4 (233-357)||(51268397-51268521)
chr4 (230-282)||(51268324-51268376)
[»] chr7 (2 HSPs)
chr7 (268-356)||(43405484-43405572)
chr7 (230-282)||(43406316-43406368)
[»] chr1 (2 HSPs)
chr1 (69-185)||(47839490-47839606)
chr1 (231-304)||(45970002-45970075)
[»] chr2 (4 HSPs)
chr2 (229-304)||(18900623-18900698)
chr2 (226-280)||(45627806-45627860)
chr2 (231-263)||(17638842-17638874)
chr2 (228-280)||(44995642-44995694)


Alignment Details
Target: chr8 (Bit Score: 123; Significance: 4e-63; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 67 - 217
Target Start/End: Complemental strand, 9531117 - 9530969
Alignment:
Q  67 aagattaacaacaaccacgaaacatggtttatgcttctttgattttgagattaaagatgagtcgaatttgatttattcttctttgattttgatattagaa 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||    
T  9531117 aagattaacaacaaccacgaaacatggtttatgcttctttgattttgagattaaagatgagtcgaatttggtttatgcttctttgattttgagattagaa 9531018  T
Q  167 atgagtcagatttggtttcttagattttgttgttgttccatgtgaaacacc 217  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  9531017 atgagtcagatttggtttc-taga-tttgttgttgttccatgtgaaacacc 9530969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 230 - 363
Target Start/End: Complemental strand, 10756649 - 10756516
Alignment:
Q  230 gagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatctccatcctttgtttaattaaccaacaatct 329  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||| ||    
T  10756649 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaactgacaacct 10756550  T
Q  330 gatatgaaattgaaatgtattaaaaattggggtg 363  Q
     |||||||||||||||||||||||||||||||||    
T  10756549 aatatgaaattgaaatgtattaaaaattggggtg 10756516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 230 - 363
Target Start/End: Complemental strand, 29740108 - 29739975
Alignment:
Q  230 gagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatctccatcctttgtttaattaaccaacaatct 329  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||| ||    
T  29740108 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaactgacaacct 29740009  T
Q  330 gatatgaaattgaaatgtattaaaaattggggtg 363  Q
     |||||||||||||||||||||||||||||||||    
T  29740008 aatatgaaattgaaatgtattaaaaattggggtg 29739975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 29739908 - 29739961
Alignment:
Q  229 agagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataa 282  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29739908 agagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 29739961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 10756450 - 10756502
Alignment:
Q  230 gagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataa 282  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10756450 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 10756502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 11128945 - 11128869
Alignment:
Q  228 aagagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatctccat 304  Q
    |||| ||||| |||||||| ||||||||||||||||||| ||||| ||||||| |||||  | ||||||| ||||||    
T  11128945 aagaaaaatgctaaggacacactctcaaacacactcttttaacaccctccaatgacatgaggccacatcacctccat 11128869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 9565713 - 9565662
Alignment:
Q  228 aagagaaatgttaaggacaaactctcaaacacactctttcaacacactccaa 279  Q
    |||| |||||||| ||||| |||||| ||||||||||||||||| |||||||    
T  9565713 aagaaaaatgttagggacacactctctaacacactctttcaacatactccaa 9565662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 230 - 363
Target Start/End: Complemental strand, 3962737 - 3962604
Alignment:
Q  230 gagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatctccatcctttgtttaattaaccaacaatct 329  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  3962737 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatctccatcctttgtttaattaaccgacaacct 3962638  T
Q  330 gatatgaaattgaaatgtattaaaaattggggtg 363  Q
     |||||||||||||||||||||||||||||||||    
T  3962637 aatatgaaattgaaatgtattaaaaattggggtg 3962604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 230 - 363
Target Start/End: Complemental strand, 30780468 - 30780335
Alignment:
Q  230 gagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatctccatcctttgtttaattaaccaacaatct 329  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||    
T  30780468 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaaccgacaacct 30780369  T
Q  330 gatatgaaattgaaatgtattaaaaattggggtg 363  Q
     |||||||||||||||||||||||||||||||||    
T  30780368 aatatgaaattgaaatgtattaaaaattggggtg 30780335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 229 - 363
Target Start/End: Complemental strand, 25054639 - 25054505
Alignment:
Q  229 agagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatctccatcctttgtttaattaaccaacaatc 328  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||| |    
T  25054639 agagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaactgacaacc 25054540  T
Q  329 tgatatgaaattgaaatgtattaaaaattggggtg 363  Q
    | |||||||||||||||||||||||||||||||||    
T  25054539 taatatgaaattgaaatgtattaaaaattggggtg 25054505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 230 - 363
Target Start/End: Original strand, 17193740 - 17193873
Alignment:
Q  230 gagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatctccatcctttgtttaattaaccaacaatct 329  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||| ||    
T  17193740 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataatatgttgacacatcatccccatcctttgtttaattaaccgacaacct 17193839  T
Q  330 gatatgaaattgaaatgtattaaaaattggggtg 363  Q
     |||||||||||||||||||||||||||||||||    
T  17193840 aatatgaaattgaaatgtattaaaaattggggtg 17193873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 30780265 - 30780321
Alignment:
Q  226 taaagagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataa 282  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30780265 taaagagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 30780321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 25054436 - 25054491
Alignment:
Q  227 aaagagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataa 282  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25054436 aaagagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 25054491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 228 - 282
Target Start/End: Complemental strand, 17193941 - 17193887
Alignment:
Q  228 aagagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataa 282  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17193941 aagagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 17193887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 3962538 - 3962590
Alignment:
Q  230 gagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataa 282  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3962538 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 3962590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 230 - 363
Target Start/End: Complemental strand, 11772940 - 11772807
Alignment:
Q  230 gagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatctccatcctttgtttaattaaccaacaatct 329  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  11772940 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaaccaacaacct 11772841  T
Q  330 gatatgaaattgaaatgtattaaaaattggggtg 363  Q
     |||||||||||||||||||||||||||||||||    
T  11772840 aatatgaaattgaaatgtattaaaaattggggtg 11772807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 230 - 363
Target Start/End: Original strand, 17534545 - 17534678
Alignment:
Q  230 gagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatctccatcctttgtttaattaaccaacaatct 329  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  17534545 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaaccaacaacct 17534644  T
Q  330 gatatgaaattgaaatgtattaaaaattggggtg 363  Q
     |||||||||||||||||||||||||||||||||    
T  17534645 aatatgaaattgaaatgtattaaaaattggggtg 17534678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 8881020 - 8881091
Alignment:
Q  228 aagagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatc 299  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8881020 aagagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatc 8881091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 11772741 - 11772793
Alignment:
Q  230 gagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataa 282  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11772741 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 11772793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 17534744 - 17534692
Alignment:
Q  230 gagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataa 282  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17534744 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 17534692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 8881138 - 8881095
Alignment:
Q  229 agagaaatgttaaggacaaactctcaaacacactctttcaacac 272  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  8881138 agagaaatgctaaggacaaactctcaaacacactctttcaacac 8881095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 10510109 - 10510073
Alignment:
Q  227 aaagagaaatgttaaggacaaactctcaaacacactc 263  Q
    |||||| |||||||||||||||||||| |||||||||    
T  10510109 aaagaggaatgttaaggacaaactctctaacacactc 10510073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 231 - 360
Target Start/End: Complemental strand, 34630786 - 34630657
Alignment:
Q  231 agaaatgttaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatctccatcctttgtttaattaaccaacaatctg 330  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||     
T  34630786 agaaatgctaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaaccgacaaccta 34630687  T
Q  331 atatgaaattgaaatgtattaaaaattggg 360  Q
    ||||||||||||||||||||||||||||||    
T  34630686 atatgaaattgaaatgtattaaaaattggg 34630657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 230 - 356
Target Start/End: Original strand, 46905406 - 46905529
Alignment:
Q  230 gagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatctccatcctttgtttaattaaccaacaatct 329  Q
    |||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||| |   |||| |||||||||||||||||||||  ||| ||    
T  46905406 gagaaatgctaaggataaactctcaaacacacactttcaacacactccaataacatgttgata---catccccatcctttgtttaattaaccggcaacct 46905502  T
Q  330 gatatgaaattgaaatgtattaaaaat 356  Q
    |||||||||||||||||||||||||||    
T  46905503 gatatgaaattgaaatgtattaaaaat 46905529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 34630586 - 34630641
Alignment:
Q  227 aaagagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataa 282  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34630586 aaagagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 34630641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 22899569 - 22899519
Alignment:
Q  230 gagaaatgttaaggacaaactctcaaacacactctttcaacacactccaat 280  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22899569 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaat 22899519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 46906319 - 46906267
Alignment:
Q  230 gagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataa 282  Q
    |||||||| ||||||||||| ||||||||||||||||  ||||||||||||||    
T  46906319 gagaaatgctaaggacaaaccctcaaacacactctttttacacactccaataa 46906267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 233 - 357
Target Start/End: Complemental strand, 51268521 - 51268397
Alignment:
Q  233 aaatgttaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatctccatcctttgtttaattaaccaacaatctgat 332  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || ||    
T  51268521 aaatgctaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaaccgacaacctaat 51268422  T
Q  333 atgaaattgaaatgtattaaaaatt 357  Q
    |||||||||||||||||||||||||    
T  51268421 atgaaattgaaatgtattaaaaatt 51268397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 51268324 - 51268376
Alignment:
Q  230 gagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataa 282  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  51268324 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 51268376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 268 - 356
Target Start/End: Original strand, 43405484 - 43405572
Alignment:
Q  268 aacacactccaataacatgttgacacatcatctccatcctttgtttaattaaccaacaatctgatatgaaattgaaatgtattaaaaat 356  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||  ||| |||||||||||||||||||||||||||||    
T  43405484 aacacactccaataacatgttgacacgtcatccccatcctttgtttaattaaccggcaacctgatatgaaattgaaatgtattaaaaat 43405572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 43406368 - 43406316
Alignment:
Q  230 gagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataa 282  Q
    |||||||| |||||| |||| ||||||||||||||||  ||||||||||||||    
T  43406368 gagaaatgctaaggataaaccctcaaacacactcttttgacacactccaataa 43406316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 185
Target Start/End: Complemental strand, 47839606 - 47839490
Alignment:
Q  69 gattaacaacaaccacgaaacatggtttatgcttctttgattttgagattaaagatgagtcgaatttgatttattcttctttgattttgatattagaaat 168  Q
    ||||||||||||  || | ||||||||||  |||||||||||||||||||||| |||  |  |||||| | ||| ||||||||||||||| |||| ||||    
T  47839606 gattaacaacaattaccacacatggtttactcttctttgattttgagattaaaaatggataaaatttggtgtatccttctttgattttgaaattaaaaat 47839507  T
Q  169 gagtcagatttggtttc 185  Q
    | |||| ||||||||||    
T  47839506 gggtcatatttggtttc 47839490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 45970002 - 45970075
Alignment:
Q  231 agaaatgttaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatctccat 304  Q
    ||||||| |||||||| ||||||||||||||||||| ||||| ||||||| |||||  | ||||||| ||||||    
T  45970002 agaaatgctaaggacacactctcaaacacactcttttaacactctccaatgacatgaggtcacatcacctccat 45970075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 18900623 - 18900698
Alignment:
Q  229 agagaaatgttaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatctccat 304  Q
    ||||||||| |||||||| ||||||||||||||||||| ||||| ||||||| |||||  | ||||||| ||||||    
T  18900623 agagaaatgctaaggacacactctcaaacacactcttttaacactctccaatgacatgaggccacatcacctccat 18900698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 280
Target Start/End: Original strand, 45627806 - 45627860
Alignment:
Q  226 taaagagaaatgttaaggacaaactctcaaacacactctttcaacacactccaat 280  Q
    |||||||||||| || |||||||||| | |||||||||||| |||||||||||||    
T  45627806 taaagagaaatgctagggacaaactccctaacacactcttttaacacactccaat 45627860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 17638842 - 17638874
Alignment:
Q  231 agaaatgttaaggacaaactctcaaacacactc 263  Q
    |||||||||| ||||||||||||||||||||||    
T  17638842 agaaatgttatggacaaactctcaaacacactc 17638874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 44995642 - 44995694
Alignment:
Q  228 aagagaaatgttaaggacaaactctcaaacacactctttcaacacactccaat 280  Q
    ||||||||||  | |||||||||||| |||| ||||||| |||||||||||||    
T  44995642 aagagaaatgccagggacaaactctctaacatactcttttaacacactccaat 44995694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University