View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548_low_12 (Length: 350)
Name: NF8548_low_12
Description: NF8548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 72 - 339
Target Start/End: Original strand, 28183847 - 28184114
Alignment:
| Q |
72 |
ccttgcactttcaacttcctttggcaagatagccttcaattcatcctcaaatgttgcaatcttttggaagattgatgtgttcgaattcttctctccttcg |
171 |
Q |
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| T |
28183847 |
ccttgcactttcaacttcctttggcaagatagccttcaattcatcctcaaatgttgcaatcttttggaagattgatgtgttcgaattcttctctccttcg |
28183946 |
T |
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| Q |
172 |
gcattcactaatgcatgatccacaagcacttgtctcaacttttgcatcaaagggtatgtagctaggcaaggatcatcagcataggcaaacacatactccc |
271 |
Q |
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| T |
28183947 |
gtattcactaatgcatgatccacaagcacttgtctcaacttttgcatcaaagggtatgtagctaggcaaggatcatcagcataggcaaacacatactccc |
28184046 |
T |
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| Q |
272 |
tgtcgacaactttgagcaaatctttctcgcaaaatcttgaaggatgaagttctccattgacacaggtt |
339 |
Q |
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| T |
28184047 |
tgtcgacaactttgagcaaatctttctcgcaaaatcttgaaggatgaagttctccattgacaccggtt |
28184114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 72 - 329
Target Start/End: Complemental strand, 40945572 - 40945315
Alignment:
| Q |
72 |
ccttgcactttcaacttcctttggcaagatagccttcaattcatcctcaaatgttgcaatcttttggaagattgatgtgttcgaattcttctctccttcg |
171 |
Q |
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||||||||||||||| || |||||||||| |||||| || |||||||| |||||||||||||| |||||||| |||||| |||||||||| | || |
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| T |
40945572 |
ccttgcactttcaacctcttttggcaagaggctcttcaactcttcctcaaaagttgcaatcttttgaaagattgaagtgttcaaattcttctcactctct |
40945473 |
T |
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| Q |
172 |
gcattcactaatgcatgatccacaagcacttgtctcaacttttgcatcaaagggtatgtagctaggcaaggatcatcagcataggcaaacacatactccc |
271 |
Q |
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| T |
40945472 |
ccattaactaatgcatgatctaccaacacttgcctgagtttttgactcaatgggtatgtagcactacaaggatcatcaatataagcaaatacatgctctc |
40945373 |
T |
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| Q |
272 |
tgtcgacaactttgagcaaatctttctcgcaaaatcttgaaggatgaagttctccatt |
329 |
Q |
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| || || ||||| | || ||||| || ||||||||||||||||||||||||||||| |
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| T |
40945372 |
tatcaaccactttcaataagtctttttcacaaaatcttgaaggatgaagttctccatt |
40945315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 72 - 329
Target Start/End: Complemental strand, 40959537 - 40959280
Alignment:
| Q |
72 |
ccttgcactttcaacttcctttggcaagatagccttcaattcatcctcaaatgttgcaatcttttggaagattgatgtgttcgaattcttctctccttcg |
171 |
Q |
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||||||||||||||| || |||||||||| |||||| || |||||||| |||||||||||||| |||||||| |||||| |||||||||| | || |
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| T |
40959537 |
ccttgcactttcaacctcttttggcaagaggctcttcaactcttcctcaaaagttgcaatcttttgaaagattgaagtgttcaaattcttctcactctct |
40959438 |
T |
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| Q |
172 |
gcattcactaatgcatgatccacaagcacttgtctcaacttttgcatcaaagggtatgtagctaggcaaggatcatcagcataggcaaacacatactccc |
271 |
Q |
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|||| |||||||||||||| || | |||||| || | ||||| |||| ||||||||||| |||||||||||| ||| ||||| |||| ||| | |
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| T |
40959437 |
ccattaactaatgcatgatctaccaacacttgcctgagtttttgactcaatgggtatgtagcactacaaggatcatcaatataagcaaatacatgctctc |
40959338 |
T |
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| Q |
272 |
tgtcgacaactttgagcaaatctttctcgcaaaatcttgaaggatgaagttctccatt |
329 |
Q |
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| || || ||||| | || ||||| || || ||||||||||| |||||||||||||| |
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| T |
40959337 |
tatcaaccactttcaataagtctttttcacataatcttgaaggttgaagttctccatt |
40959280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 43217319 - 43217269
Alignment:
| Q |
72 |
ccttgcactttcaacttcctttggcaagatagccttcaattcatcctcaaa |
122 |
Q |
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||||||||||||||||||||||||||| | || |||||||||||||||||| |
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| T |
43217319 |
ccttgcactttcaacttcctttggcaaaagagacttcaattcatcctcaaa |
43217269 |
T |
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