View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548_low_14 (Length: 335)
Name: NF8548_low_14
Description: NF8548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 20 - 321
Target Start/End: Original strand, 49935881 - 49936182
Alignment:
| Q |
20 |
gatagaacactcggatccgtgcttcgagaaagaagccttgcaagaggaagcatctcagcaatctccgctcgacatacttcaagtttcattctccacctgc |
119 |
Q |
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| T |
49935881 |
gatagaacactcggatccgtgcttcgagaaagaagccttgcaagaggaagcatctcggcaatctccgctcgacatacttcaagtttcattctccacctgc |
49935980 |
T |
|
| Q |
120 |
ccatcgaggatataacactactaagatgcccagacattagccatttcaaaatgccttcctcttttccatcattaaggttgcgatcgctggctccaggcaa |
219 |
Q |
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| T |
49935981 |
ccatcgaggatataacactactaagatgcccagacattagccttttcaaaatgccttcctcttttccatcattaaggttgcgatcgctggatccaggcaa |
49936080 |
T |
|
| Q |
220 |
tacatattcaccttgaagttcataatgactgttgctttgttcaaagataattttttcaatagtgatctgaacaatagcacatcaacagacattcagtata |
319 |
Q |
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| T |
49936081 |
tacatattcaccttgaagttcataatgactgttgctttgttcaaagataattttttcaatagtgatctgaacaatagcacatcaacagacattcagtata |
49936180 |
T |
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| Q |
320 |
at |
321 |
Q |
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|| |
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| T |
49936181 |
at |
49936182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 32 - 294
Target Start/End: Complemental strand, 1912647 - 1912385
Alignment:
| Q |
32 |
ggatccgtgcttcgagaaagaagccttgcaagaggaagcatctcagcaatctccgctcgacatacttcaagtttcattctccacctgcccatcgaggata |
131 |
Q |
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|||||| |||| |||||||||||||| |||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
1912647 |
ggatccatgctccgagaaagaagcctcgcaagaggaagcatctcagcaacctctgctctgggaacttcaagtttcattctccacctgcccattgaggata |
1912548 |
T |
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| Q |
132 |
taacactactaa---gatgcccagacattagccatttcaaaatgccttcctcttttccatcattaaggttgcgatcgctggctccaggcaatacatattc |
228 |
Q |
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||||||||| || |||| || ||||||||| ||| |||| ||| |||| ||| ||| || | || ||||| | | |||||||| || ||||| |
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| T |
1912547 |
taacactaccaacgcgatgacccgacattagctttttaaaaaggcc-acctc--ctccgtcaataggattacgatctcgagtaccaggcaaaacgtattc |
1912451 |
T |
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| Q |
229 |
accttgaagttcataatgactgttgctttgttcaaagataattttttcaatagtgatctgaacaat |
294 |
Q |
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||||||||||||||||| |||| | |||||| || | | ||||||||||||||||||||||||| |
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| T |
1912450 |
accttgaagttcataatagctgtggttttgttgcaaaacagttttttcaatagtgatctgaacaat |
1912385 |
T |
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