View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548_low_16 (Length: 314)
Name: NF8548_low_16
Description: NF8548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 31557036 - 31557330
Alignment:
| Q |
1 |
ataaaaggtactataagaaaataaaactgtattgactatatagtcaataatattatatcatataatagacaaagcacatgtcaatttacaatgccccact |
100 |
Q |
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| T |
31557036 |
ataaaaggtactataagaaaataaaactgtattgactatatagtcaataatattatatcatataatagacaaagcacatgtcaatttacaatgccccact |
31557135 |
T |
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| Q |
101 |
ttgtaataataggttacacaattcctaagggaatgaaggtgattgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaagatgctcgcacctt |
200 |
Q |
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| T |
31557136 |
ttgtaataataggttacacaattcctaagggaatgaaggtgattgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaagatgctcgcacctt |
31557235 |
T |
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| Q |
201 |
caatccatggagatggcaggtacatgattagnnnnnnnattattgctgatctaattaatgttatgttgagttacactgcactcttcagttgcttat |
296 |
Q |
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| T |
31557236 |
caatccatggagatggcaggtacatgattag-ttttttattattgctgatctaattaatgttatgttgagttacactacactcttcagttgcttat |
31557330 |
T |
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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 35478967 - 35479046
Alignment:
| Q |
143 |
ttgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaagatgctcgcaccttcaatccatggagatggcaggta |
222 |
Q |
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|||||||||||||||| || ||| | || || || |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35478967 |
ttgcatcatttcgtgccgtacatctaaaccccgatcatttcaaagatgcgcgcaccttcaatccatggagatggcaggta |
35479046 |
T |
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