View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8548_low_17 (Length: 298)
Name: NF8548_low_17
Description: NF8548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548_low_17 |
 | |
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| [»] chr3 (33 HSPs) |
| |
|
| [»] scaffold0257 (1 HSPs) |
| |
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| [»] chr7 (1 HSPs) |
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|
| [»] chr2 (2 HSPs) |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 33)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 40 - 298
Target Start/End: Original strand, 28481360 - 28481618
Alignment:
| Q |
40 |
ctgaagccagagatagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtagattttcaaa |
139 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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|
| T |
28481360 |
ctgaagccagagagagtttttgacaattcagtatgaaacgatgttttacagcttgaaattgaattccctgatcatgacagaggcttggtagattttcaaa |
28481459 |
T |
|
| Q |
140 |
tactacacattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatgatcagaacaatt |
239 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || |
|
|
| T |
28481460 |
tactacaaattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctcgaactcgtctgcttctcttatgatgagaacattt |
28481559 |
T |
|
| Q |
240 |
agctctggaagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
298 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28481560 |
agctttggaagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
28481618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 29 - 298
Target Start/End: Complemental strand, 28148139 - 28147870
Alignment:
| Q |
29 |
tggtgttgactctgaagccagagatagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggt |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| |||||| |||||||||| |
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|
| T |
28148139 |
tggtgttgactctgaagccagagatagtttttgacaattcagtatgaaacgatgttttacaacttgaaattgaattccctgagcatgatagaggcttggt |
28148040 |
T |
|
| Q |
129 |
agattttcaaatactacacattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatga |
228 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||| |
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|
| T |
28148039 |
agattttcaaatattacaagttttagatttggaatctccactttgtgatcatcaaattcacttacaaatatttcctctaactcatctgcttctcttatga |
28147940 |
T |
|
| Q |
229 |
tcagaacaattagctctggaagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
298 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28147939 |
tcagaacctttagctcaggaagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
28147870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 40 - 298
Target Start/End: Complemental strand, 28002572 - 28002314
Alignment:
| Q |
40 |
ctgaagccagagatagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtagattttcaaa |
139 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||| ||||| ||||||||||| ||||||||||||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
28002572 |
ctgaagtcagagatagtttttgacaattcagtatgagacgatgttttacagcttcaaattgaattccctgatcatgacagaggcttcgtagattttcaaa |
28002473 |
T |
|
| Q |
140 |
tactacacattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatgatcagaacaatt |
239 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || |
|
|
| T |
28002472 |
tactacaaattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctacctcgtctgcttctcttatggtcagaacattt |
28002373 |
T |
|
| Q |
240 |
agctctggaagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
298 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28002372 |
agctcaggaagctctttacatatggagattggaaacacatatttcaacttgttgcactt |
28002314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 40 - 298
Target Start/End: Original strand, 28510532 - 28510790
Alignment:
| Q |
40 |
ctgaagccagagatagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtagattttcaaa |
139 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
28510532 |
ctgaagccagagagagtttttgacaattcattattaaacgatgttttacagcttgaaattgaattccctgagcatgatagaggcttggtagattttcaaa |
28510631 |
T |
|
| Q |
140 |
tactacacattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatgatcagaacaatt |
239 |
Q |
| |
|
|| |||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28510632 |
tattacaagttttagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctaactcatctgcttctcttatgatcagaacaatt |
28510731 |
T |
|
| Q |
240 |
agctctggaagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28510732 |
agctctggaagctctttagatatggagattggaaagacatatttcaacttgttgcactt |
28510790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 46 - 298
Target Start/End: Complemental strand, 28184155 - 28183903
Alignment:
| Q |
46 |
ccagagatagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtagattttcaaatactac |
145 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28184155 |
ccagagagagtttttgacaattccgtatgaaacgattttttacagcttgaaattgaattctctgggcatgactgaggcttggtagattttcaaatactac |
28184056 |
T |
|
| Q |
146 |
acattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatgatcagaacaattagctct |
245 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||| | ||| |||||||||||||| ||||||||| ||||||| |
|
|
| T |
28184055 |
acattctagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctccagctcatctgcttctcttatcatcagaacatttagctca |
28183956 |
T |
|
| Q |
246 |
ggaagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
298 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28183955 |
ggaagctctttacatatggagattggaaacacatatttcaacttgttgcactt |
28183903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 40 - 298
Target Start/End: Complemental strand, 28132344 - 28132086
Alignment:
| Q |
40 |
ctgaagccagagatagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtagattttcaaa |
139 |
Q |
| |
|
|||||| |||||| |||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28132344 |
ctgaagtcagagagagtttttgacaattctgtatgaaacgatgttttacatcttgaaattgaattccctgggcatgattgaggcttggtagattttcaaa |
28132245 |
T |
|
| Q |
140 |
tactacacattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatgatcagaacaatt |
239 |
Q |
| |
|
|| |||| ||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
28132244 |
tattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctaactcgtctgcttctcttatgatcagataatat |
28132145 |
T |
|
| Q |
240 |
agctctggaagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
298 |
Q |
| |
|
||||| |||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28132144 |
agctcaggaagctctttacatacggagattggaaagacatatttcaacttgttgcactt |
28132086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 46 - 298
Target Start/End: Complemental strand, 28159591 - 28159339
Alignment:
| Q |
46 |
ccagagatagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtagattttcaaatactac |
145 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28159591 |
ccagagagagtttttgacaattccgtatgaaacgattttttacagcttgaaattgaattctctgggcatgactgaggattggtagattttcaaatactac |
28159492 |
T |
|
| Q |
146 |
acattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatgatcagaacaattagctct |
245 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||||||||||| || ||||||||||||||| ||| |||| ||||||||| ||||||||| ||||||| |
|
|
| T |
28159491 |
acattctagatttggaatcttcactttctgatcatcaccttcaattacaaatatttcctctagctcatctgattctcttatcatcagaacatttagctca |
28159392 |
T |
|
| Q |
246 |
ggaagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
298 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28159391 |
ggaagctctttacatatggagattggaaatacatatttcaacttgttgcactt |
28159339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 40 - 298
Target Start/End: Complemental strand, 28082137 - 28081879
Alignment:
| Q |
40 |
ctgaagccagagatagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtagattttcaaa |
139 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||||||| ||||||||||| |
|
|
| T |
28082137 |
ctgaagccagagagagtttttgacaattctgtatgaaacgatatgttacagcttcaaattgaattccttgggcatgacagaggcttggaagattttcaaa |
28082038 |
T |
|
| Q |
140 |
tactacacattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatgatcagaacaatt |
239 |
Q |
| |
|
||||||| || ||||| ||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| | || |
|
|
| T |
28082037 |
tactacaaatcgtagatatggaatctccactttgtgatcatcaccttcgcttacaaatatttcctctaactcatctgcttctcttatgatcagataattt |
28081938 |
T |
|
| Q |
240 |
agctctggaagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
298 |
Q |
| |
|
||||| |||||||||||| ||| |||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
28081937 |
agctcaggaagctctttatatacggagattggaaagacatatttcaacttgttacactt |
28081879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 31 - 298
Target Start/End: Complemental strand, 28053878 - 28053611
Alignment:
| Q |
31 |
gtgttgactctgaagccagagatagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtag |
130 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28053878 |
gtgttgatgctgaagtcagagatagtttttgacaattcagtatgaaacgatgttttacagcttgaaattgaattccctggtcatgactgaggcttggtag |
28053779 |
T |
|
| Q |
131 |
attttcaaatactacacattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatgatc |
230 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||| | |
|
|
| T |
28053778 |
attttcaaatactacaagttttagatttggaatctccactttgtgatcatcactttcacttacaaatatttcctctagctcatctgcttctcttatcact |
28053679 |
T |
|
| Q |
231 |
agaacaattagctctggaagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
298 |
Q |
| |
|
||| | | || | ||||||||| || |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28053678 |
agagccactaaatggggaagctctctaaatatggagattggaaacacatatttcaacttgttacactt |
28053611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 31 - 298
Target Start/End: Complemental strand, 28064303 - 28064036
Alignment:
| Q |
31 |
gtgttgactctgaagccagagatagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtag |
130 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28064303 |
gtgttgatgctgaagtcagagatagtttttgacaattcagtatgaaacgatgttttacagcttgaaattgaattccctggtcatgactgaggcttggtag |
28064204 |
T |
|
| Q |
131 |
attttcaaatactacacattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatgatc |
230 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||| | |
|
|
| T |
28064203 |
attttcaaatactacaagttttagatttggaatctccactttgtgatcatcactttcacttacaaatatttcctctagctcatctgcttctcttatcact |
28064104 |
T |
|
| Q |
231 |
agaacaattagctctggaagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
298 |
Q |
| |
|
||| | | || | ||||||||| || |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28064103 |
agagccactaaatggggaagctctctaaatatggagattggaaacacatatttcaacttgttacactt |
28064036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 41 - 298
Target Start/End: Complemental strand, 27918765 - 27918508
Alignment:
| Q |
41 |
tgaagccagagatagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtagattttcaaat |
140 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||| |||||||| |||||| |||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
27918765 |
tgaagccagagatagtgtttgacaattctgtatgaaacgatgttttacagtttgaaaatgaattccctggacatcactgaggcttggtagattttcaaat |
27918666 |
T |
|
| Q |
141 |
actacacattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatgatcagaacaatta |
240 |
Q |
| |
|
|||| | ||| ||||||||||||||| ||||| ||||||||||||||| || |||||||||| || | ||| |||||||||||||| | ||| ||| |
|
|
| T |
27918665 |
actagatattctagatttggaatctccactttctgatcatcaccttcatttgcaaatatttcatccagctcatctgcttctcttatcactagacacttta |
27918566 |
T |
|
| Q |
241 |
gctctggaagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
298 |
Q |
| |
|
|||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27918565 |
gctcaggaaggtctttacatatggagattggaaagacatatttcaacttgttgcactt |
27918508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 45 - 296
Target Start/End: Complemental strand, 27975741 - 27975490
Alignment:
| Q |
45 |
gccagagatagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtagattttcaaatacta |
144 |
Q |
| |
|
||||| || |||||||||||||| |||||| | ||| |||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| || |
|
|
| T |
27975741 |
gccagggagagtttttgacaattctgtatggcatgatgttttacagcttgaaattgaattccttggtcatgatggaggcttggtagattttcaaatatta |
27975642 |
T |
|
| Q |
145 |
cacattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatgatcagaacaattagctc |
244 |
Q |
| |
|
|| | | |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||| | ||||| |||||| |
|
|
| T |
27975641 |
caactatcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcagctgcttctcttatcaagagaacctctagctc |
27975542 |
T |
|
| Q |
245 |
tggaagctctttagatatggagattggaaacacatatttcaacttgttgcac |
296 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27975541 |
aagaagctctttacatatggagattggaaacacatatttcaacttgttgcac |
27975490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 41 - 298
Target Start/End: Complemental strand, 11419124 - 11418867
Alignment:
| Q |
41 |
tgaagccagagatagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtagattttcaaat |
140 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| || | || ||||| |||||||||||| |
|
|
| T |
11419124 |
tgaagccagagagagtttttgacaattctgtatgaaacgatattttacagcttgatattgaattctctgggtatcccagaaacttggcagattttcaaat |
11419025 |
T |
|
| Q |
141 |
actacacattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatgatcagaacaatta |
240 |
Q |
| |
|
|||| | |||| ||||| ||||||||| ||| |||| |||| |||||||| ||||||||||||||| ||| ||||| |||||||| ||||||||| || |
|
|
| T |
11419024 |
actaaaaatttaagattcggaatctcgcttttctgatgatcatcttcacttacaaatatttcctctagctcatctgcgtctcttatcatcagaacatata |
11418925 |
T |
|
| Q |
241 |
gctctggaagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
298 |
Q |
| |
|
|||| |||||||||||| | | |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11418924 |
gctcaggaagctctttacacagggagattggaaaaacatatttcaacttgttgcactt |
11418867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 28035821 - 28035574
Alignment:
| Q |
41 |
tgaagccagagatagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtagattttcaaat |
140 |
Q |
| |
|
|||||||||||||||| |||||||||| || |||||||| | |||||||| |||||| ||||||| |||| |||||||||| ||||||||||||||||| |
|
|
| T |
28035821 |
tgaagccagagatagtgtttgacaattctgcatgaaacgttgttttacagtttgaaaatgaattctctggacatgactgagtcttggtagattttcaaac |
28035722 |
T |
|
| Q |
141 |
actacacattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatgatcagaacaatta |
240 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| || | || |||||||||||||| || ||| | || |
|
|
| T |
28035721 |
actacaaattttagatttggaatctccactttctgatcatcaccttcacttgcaaatatttcttccatcttatctgcttctcttatcattagagcttcta |
28035622 |
T |
|
| Q |
241 |
gctctggaagctctttagatatggagattggaaacacatatttcaact |
288 |
Q |
| |
|
|| |||||||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
28035621 |
acttgggaagctctttacatatggagattggaaagacatattttaact |
28035574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 53 - 298
Target Start/End: Original strand, 27460919 - 27461161
Alignment:
| Q |
53 |
tagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtagattttcaaatactacacatttt |
152 |
Q |
| |
|
||||||||||||||| |||| ||| ||| |||||||||||| | ||||||||||||| |||||| |||||||||||||||| ||||||||||| |||| |
|
|
| T |
27460919 |
tagtttttgacaattctgtaccaaatgatgttttacagcttggagttgaattccctggacatgacagaggcttggtagatttacaaatactacaagtttt |
27461018 |
T |
|
| Q |
153 |
agatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatgatcagaacaattagctctggaagct |
252 |
Q |
| |
|
|||||||||||||| | ||| |||||||| ||||||| ||||||||||||||| | ||||||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
27461019 |
agatttggaatctccagtttctgatcatctttttcacttacaaatatttcctctagc---tctgcttctcttatgattagaacctctagctcaggaagct |
27461115 |
T |
|
| Q |
253 |
ctttagatatggagattggaaacacatatttcaacttgttgcactt |
298 |
Q |
| |
|
||||| ||||||| |||||||| ||||||||||||| |||||||| |
|
|
| T |
27461116 |
ctttacatatggacattggaaagacatatttcaactgattgcactt |
27461161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 40 - 298
Target Start/End: Original strand, 17746033 - 17746288
Alignment:
| Q |
40 |
ctgaagccagagatagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtagattttcaaa |
139 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||| || || |||| ||||||||||| || |||| |
|
|
| T |
17746033 |
ctgaagccagagagagtttttgacaattccgtatgaaacgatgttttacagcttgaaattgaattccttgagcttgacaaaggcttggtaggttgacaaa |
17746132 |
T |
|
| Q |
140 |
tactacacattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatgatcagaacaatt |
239 |
Q |
| |
|
| | ||| ||| || || ||||| | |||||| | |||||||||||||||||||||||||||||| ||| | |||||||||||| || ||| | | |
|
|
| T |
17746133 |
tgccacaactttcagtttcggaatattgactttct---catcaccttcacttccaaatatttcctctagctcatatgcttctcttatcattagaccctct |
17746229 |
T |
|
| Q |
240 |
agctctggaagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
298 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
17746230 |
agctcaggaagctctttacatatggagattggaaagacatataacaacttgttgcactt |
17746288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 40 - 298
Target Start/End: Original strand, 19047353 - 19047608
Alignment:
| Q |
40 |
ctgaagccagagatagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtagattttcaaa |
139 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||| || || |||| ||||||||||| || |||| |
|
|
| T |
19047353 |
ctgaagccagagagagtttttgacaattccgtatgaaacgatgttttacagcttgaaattgaattccttgagcttgacaaaggcttggtaggttgacaaa |
19047452 |
T |
|
| Q |
140 |
tactacacattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatgatcagaacaatt |
239 |
Q |
| |
|
| | ||| ||| || || ||||| | |||||| | |||||||||||||||||||||||||||||| ||| | |||||||||||| || ||| | | |
|
|
| T |
19047453 |
tgccacaactttcagtttcggaatattgactttct---catcaccttcacttccaaatatttcctctagctcatatgcttctcttatcattagaccctct |
19047549 |
T |
|
| Q |
240 |
agctctggaagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
298 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
19047550 |
agctcaggaagctctttacatatggagattggaaagacatataacaacttgttgcactt |
19047608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 40 - 298
Target Start/End: Original strand, 27392096 - 27392351
Alignment:
| Q |
40 |
ctgaagccagagatagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtagattttcaaa |
139 |
Q |
| |
|
|||||| |||||| |||| | ||||| | ||||| ||||||||| | | |||||||| |||||||| |||| || |||||||||||||| || |||| |
|
|
| T |
27392096 |
ctgaagtcagagagagttctcgacaactttgtataaaacgatatggtgctgcttgaaaatgaattccttgggtctggctgaggcttggtaggttgacaaa |
27392195 |
T |
|
| Q |
140 |
tactacacattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatgatcagaacaatt |
239 |
Q |
| |
|
| ||||| |||| ||||||||||| | |||||| | ||||| |||| | | ||||||||||||||| ||| ||||||||||||||||||||||| || |
|
|
| T |
27392196 |
tgctacaaatttcagatttggaatattgactttct---catcaacttcgcatacaaatatttcctctagctcatctgcttctcttatgatcagaaccttt |
27392292 |
T |
|
| Q |
240 |
agctctggaagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
298 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
27392293 |
agctcaggaagctctttacatatggagattggaaacacatatttcaacattttgcactt |
27392351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 177 - 297
Target Start/End: Complemental strand, 27347671 - 27347551
Alignment:
| Q |
177 |
tcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatgatcagaacaattagctctggaagctctttagatatggagattggaaaca |
276 |
Q |
| |
|
|||||||||| || | ||||||||||||| || || |||| |||||||||||| ||| | |||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
27347671 |
tcatcacctttacatacaaatatttcctccaattcttctgattctcttatgattagagcctctagctcaggaagctctttacatatggagattggaaaca |
27347572 |
T |
|
| Q |
277 |
catatttcaacttgttgcact |
297 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
27347571 |
catatttcaacatgttgcact |
27347551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 296
Target Start/End: Complemental strand, 12146411 - 12146162
Alignment:
| Q |
47 |
cagagatagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtagattttcaaatactaca |
146 |
Q |
| |
|
|||||| |||| ||||||||| || || | ||||| || |||||| ||||| |||||||| || | || | ||| |||||||| || ||||| ||||| |
|
|
| T |
12146411 |
cagagagagttcttgacaattttggataatacgattttgtacagcctgaaaatgaattccttgagtctggcagagacttggtaggttgacaaatgctaca |
12146312 |
T |
|
| Q |
147 |
cattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatgatcagaacaattagctctg |
246 |
Q |
| |
|
||| || |||||||| | |||||| | |||| | |||||| | ||||||||||||||| ||| | |||||||||||| || |||| |||||| | |
|
|
| T |
12146311 |
aattccagttttggaatattgactttctcatcaccttcttcacatacaaatatttcctctagctcatttgcttctcttataattagaaactgtagctcag |
12146212 |
T |
|
| Q |
247 |
gaagctctttagatatggagattggaaacacatatttcaacttgttgcac |
296 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||| | |||||| |
|
|
| T |
12146211 |
gaagctctttacatatggagattggaaacacatattttaacattttgcac |
12146162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 195 - 291
Target Start/End: Original strand, 26210106 - 26210202
Alignment:
| Q |
195 |
aatatttcctctaactcgtctgcttctcttatgatcagaacaattagctctggaagctctttagatatggagattggaaacacatatttcaacttgt |
291 |
Q |
| |
|
||||||||||||||||| | |||||||||||| |||| |||| ||||||| |||| ||||||| | ||||||| ||||||||||||||||||||||| |
|
|
| T |
26210106 |
aatatttcctctaactcatttgcttctcttattatcataacatttagctcaggaaactctttacaaatggagactggaaacacatatttcaacttgt |
26210202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 195 - 291
Target Start/End: Original strand, 26114998 - 26115094
Alignment:
| Q |
195 |
aatatttcctctaactcgtctgcttctcttatgatcagaacaattagctctggaagctctttagatatggagattggaaacacatatttcaacttgt |
291 |
Q |
| |
|
|||||||| |||||||| | |||||||||||| |||| ||| ||||||| |||||||||||| | ||||||| |||||| |||||||||||||||| |
|
|
| T |
26114998 |
aatatttcttctaactcatttgcttctcttattatcataacctttagctcaggaagctctttacaaatggagactggaaagacatatttcaacttgt |
26115094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 195 - 291
Target Start/End: Original strand, 26237350 - 26237446
Alignment:
| Q |
195 |
aatatttcctctaactcgtctgcttctcttatgatcagaacaattagctctggaagctctttagatatggagattggaaacacatatttcaacttgt |
291 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| || ||| ||||||| |||| ||||||| | ||||||| |||||||| |||||||||||||| |
|
|
| T |
26237350 |
aatatttcctctaactcatttgcttctcttatgaacataacctttagctcaggaaactctttacaaatggagactggaaacatatatttcaacttgt |
26237446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 289
Target Start/End: Original strand, 18026366 - 18026576
Alignment:
| Q |
76 |
aacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtagattttcaaatactacacattttagatttggaatctcgactttgtg |
175 |
Q |
| |
|
|||||| || ||| || ||||| ||||||| |||| || |||||||||||||| || |||| ||||| || | ||||||||||| | ||||| || |
|
|
| T |
18026366 |
aacgattttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgctacatatctcagatttggaatattgacttcctg |
18026465 |
T |
|
| Q |
176 |
atcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatgatcagaacaattagctctggaagctctttagatatggagattggaaac |
275 |
Q |
| |
|
|||| | ||||| | ||||||||||||||| || ||||||||| |||||| | ||| ||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
18026466 |
atcaac---ttcacatacaaatatttcctctagcttctctgcttctactatgattataacctttagctcaggaagctctttatatatggagattggaaag |
18026562 |
T |
|
| Q |
276 |
acatatttcaactt |
289 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
18026563 |
acatttttcaactt |
18026576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 28481919 - 28481978
Alignment:
| Q |
239 |
tagctctggaagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
298 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28481919 |
tagctcaggaaggtctttacatatggagattggaaacacatatttcaacttgttgcactt |
28481978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 48 - 295
Target Start/End: Complemental strand, 26627880 - 26627631
Alignment:
| Q |
48 |
agagatagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtagattttcaaatactac-a |
146 |
Q |
| |
|
||||| |||||||||||||| |||| ||||||| || |||| | |||||||||||||| || | || | |||||||| ||| | ||||| |||| | |
|
|
| T |
26627880 |
agagagagtttttgacaattctgtacaaaacgattttctacatcctgaaattgaattccttgtgtctggcagaggcttg-taggtcgacaaatgctacca |
26627782 |
T |
|
| Q |
147 |
cattttagatttggaatctcgactttgtgatcatcacc---ttcacttccaaatatttcctctaactcgtctgcttctcttatgatcagaacaattagct |
243 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||| | |||| || ||||||||||||| || | ||||||||||| |||||||| ||||| |
|
|
| T |
26627781 |
cattt-agatttggaatctcgactttctgatcatcatcatcttcatttttgaatatttcctctagttcaccagcttctcttatcatcagaacctctagct |
26627683 |
T |
|
| Q |
244 |
ctggaagctctttagatatggagattggaaacacatatttcaacttgttgca |
295 |
Q |
| |
|
| |||||||||| ||| | |||| ||||||| ||||||||||||| |||| |
|
|
| T |
26627682 |
caggaagctcttgagaaacggaggttggaaatcaatatttcaacttggtgca |
26627631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 291
Target Start/End: Original strand, 26180615 - 26180711
Alignment:
| Q |
195 |
aatatttcctctaactcgtctgcttctcttatgatcagaacaattagctctggaagctctttagatatggagattggaaacacatatttcaacttgt |
291 |
Q |
| |
|
||||||||||||| ||| | |||||||||||| | || ||| ||||||| |||| ||||||| | ||||||| |||||||||||| |||||||||| |
|
|
| T |
26180615 |
aatatttcctctagctcatttgcttctcttatcaacataacctttagctcaggaaactctttacaaatggagactggaaacacatacttcaacttgt |
26180711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 26237182 - 26237299
Alignment:
| Q |
48 |
agagatagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtagattttcaaatactacac |
147 |
Q |
| |
|
||||| |||||||||||| | |||| ||||||| ||| || || ||||| |||| | |||||||||| | |||||||||||| | ||||| ||||| |
|
|
| T |
26237182 |
agagagagtttttgacaactatgtaccaaacgatgtttcactgcctgaaaatgaacttcctgggcatggcagaggcttggtaggtaggcaaatcctacag |
26237281 |
T |
|
| Q |
148 |
attttagatttggaatct |
165 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
26237282 |
cttttagatttggaatct |
26237299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 291
Target Start/End: Original strand, 26142310 - 26142406
Alignment:
| Q |
195 |
aatatttcctctaactcgtctgcttctcttatgatcagaacaattagctctggaagctctttagatatggagattggaaacacatatttcaacttgt |
291 |
Q |
| |
|
||||||||||||| ||| | |||||||||||| | || | | |||||| |||| ||||||| | |||||||||||||| ||||| |||||||||| |
|
|
| T |
26142310 |
aatatttcctctagctcatttgcttctcttatcaacacagcctttagcttaggaaactctttacaaatggagattggaaagacatacttcaacttgt |
26142406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 26209959 - 26210055
Alignment:
| Q |
69 |
tgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtagattttcaaatactacacattttagatttggaatct |
165 |
Q |
| |
|
||||| ||||||| ||| || || ||||| |||| | |||||||||| | |||||||||||| || ||||| ||||| ||||||||||||||||| |
|
|
| T |
26209959 |
tgtataaaacgatgtttcactgcctgaaaatgaacttcctgggcatggcagaggcttggtaggttggcaaatcctacagcttttagatttggaatct |
26210055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 28147730 - 28147678
Alignment:
| Q |
246 |
ggaagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
298 |
Q |
| |
|
||||| |||||| ||||||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
28147730 |
ggaaggtctttatatatggaaattgaaaagacatatttcaacttgttgcactt |
28147678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 28481758 - 28481810
Alignment:
| Q |
246 |
ggaagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
298 |
Q |
| |
|
||||| |||||| ||||||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
28481758 |
ggaaggtctttacatatggaaattgaaaagacatatttcaacttgttgcactt |
28481810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 296
Target Start/End: Complemental strand, 27376564 - 27376345
Alignment:
| Q |
77 |
acgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtagattttcaaatactacacattttagatttggaatctcgactttgtga |
176 |
Q |
| |
|
||||| || |||||| ||||| |||||||| || | || | ||| |||||||| || ||||| ||||| |||||||||||| || | |||||| | | |
|
|
| T |
27376564 |
acgattttgtacagcctgaaaatgaattccttgagtctggcagagacttggtaggttgacaaatgctacaagttttagatttggcatattgactttctca |
27376465 |
T |
|
| Q |
177 |
tcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatgatcagaacaattagctctggaagctctttagatatggagattggaaaca |
276 |
Q |
| |
|
||| | |||||| | ||||||||||||||| || |||| |||| |||| | ||| |||||| |||||||||| | |||||||||||||||| | |
|
|
| T |
27376464 |
tcaccttcttcacatacaaatatttcctctagcttatctgattcttttatcactagactctctagctcaggaagctcttcacatatggagattggaaaga |
27376365 |
T |
|
| Q |
277 |
catatttcaacttgttgcac |
296 |
Q |
| |
|
||| ||||||| | |||||| |
|
|
| T |
27376364 |
catttttcaacattttgcac |
27376345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 29 - 298
Target Start/End: Complemental strand, 17734 - 17465
Alignment:
| Q |
29 |
tggtgttgactctgaagccagagatagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggt |
128 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17734 |
tggtgttgatgctgaagccagagatagtttttgacaattctgtatgaaacggtattttacagcttgaaattgaattccctgggcatgactgagtcttggt |
17635 |
T |
|
| Q |
129 |
agattttcaaatactacacattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatga |
228 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||| || |||||||||||| ||| |||||||||||||| | |
|
|
| T |
17634 |
agattttcaaatactacaaattttagatttggaatctccattttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatca |
17535 |
T |
|
| Q |
229 |
tcagaacaattagctctggaagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
298 |
Q |
| |
|
||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17534 |
ctagacactttagctcaggaagctctttacatatggagattggaaacacatatttcaacttgttgcactt |
17465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 99 - 298
Target Start/End: Original strand, 8693252 - 8693451
Alignment:
| Q |
99 |
tgaattccctgggcatgactgaggcttggtagattttcaaatactacacattttagatttggaatctcgactttgtgatcatcaccttcacttccaaata |
198 |
Q |
| |
|
|||||||| |||||||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||| | |||| |||||||||| |||||| |
|
|
| T |
8693252 |
tgaattccttgggcatgacagaggcttggaagattttcaaatactacatattctagatttggaatctcgactttctcatcacgaccttcacttgcaaata |
8693351 |
T |
|
| Q |
199 |
tttcctctaactcgtctgcttctcttatgatcagaacaattagctctggaagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
298 |
Q |
| |
|
|||| || | ||| |||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||| |||||| |||||||||||| ||| |||||| |
|
|
| T |
8693352 |
tttcatccagctcatctgcttctcttatgatcagaacatttagctcaggaagctcgttacatatggagactggaaagacatatttcaacatgtcgcactt |
8693451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 124 - 298
Target Start/End: Complemental strand, 8020071 - 8019897
Alignment:
| Q |
124 |
ttggtagattttcaaatactacacattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctaactcgtctgcttctct |
223 |
Q |
| |
|
|||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| | ||||||||| |
|
|
| T |
8020071 |
ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct |
8019972 |
T |
|
| Q |
224 |
tatgatcagaacaattagctctggaagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
298 |
Q |
| |
|
|||||||||| | ||||||| |||||||||||| |||||||||||||||| |||| ||||||||| ||||||| |
|
|
| T |
8019971 |
tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacatggttcaacttgatgcactt |
8019897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 298
Target Start/End: Complemental strand, 22391515 - 22391265
Alignment:
| Q |
48 |
agagatagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtagattttcaaatactacac |
147 |
Q |
| |
|
||||| ||||||| |||||| |||| |||| || || |||||| ||||| |||||| | |||| ||| |||||||||||| || ||||| |||| |
|
|
| T |
22391515 |
agagagagttttttacaattttgtacaaaacaattttgtacagcctgaaaatgaatttcttgggtctgatagaggcttggtaggttgacaaatgatacaa |
22391416 |
T |
|
| Q |
148 |
attttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatgatcagaacaattagctctgg |
247 |
Q |
| |
|
|||||||||||| || | |||||| |||||| | |||||| | ||||||||||||||| || | |||||| ||||| | ||| | |||||| || |
|
|
| T |
22391415 |
cttttagatttggcatattgactttctgatcaccttcttcacatacaaatatttcctctagcttatatgcttcacttatcactagagcctctagctcagg |
22391316 |
T |
|
| Q |
248 |
aagctctttagatatggagattggaaacacatatttcaacttgttgcactt |
298 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||| ||| | |||||||| |
|
|
| T |
22391315 |
aagctctttacatatggagattggaaagacatattttaacattttgcactt |
22391265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 47 - 296
Target Start/End: Original strand, 54591 - 54840
Alignment:
| Q |
47 |
cagagatagtttttgacaattgtgtatgaaacgatattttacagcttgaaattgaattccctgggcatgactgaggcttggtagattttcaaatactaca |
146 |
Q |
| |
|
|||||| |||| ||||||||| || | ||||||| || |||||| ||||| |||||||| |||| || ||||||||| || || |||| ||||| |
|
|
| T |
54591 |
cagagagagttcttgacaattttggacaaaacgattttgtacagcctgaaaatgaattccttgggtctggtagaggcttggaaggttggtaaatgctaca |
54690 |
T |
|
| Q |
147 |
cattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctaactcgtctgcttctcttatgatcagaacaattagctctg |
246 |
Q |
| |
|
||| |||||||||| | |||||| |||||| | |||||| | ||||||||||||||| ||| | ||||||||||||||| ||| || |||||| | |
|
|
| T |
54691 |
actttcagatttggaagattgactttctgatcaccttcttcacatacaaatatttcctctagctcatgtgcttctcttatgattagagcatctagctcag |
54790 |
T |
|
| Q |
247 |
gaagctctttagatatggagattggaaacacatatttcaacttgttgcac |
296 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| || ||||||||||||| |
|
|
| T |
54791 |
gaagctctttacatatggagattggaaagacattttccaacttgttgcac |
54840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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