View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548_low_2 (Length: 721)
Name: NF8548_low_2
Description: NF8548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 152 - 707
Target Start/End: Complemental strand, 37217051 - 37216496
Alignment:
| Q |
152 |
agcagagattaaatttgaagaattcatataaacgaaggagatctaatttcgattcctttagttatgatttgggggatacctatagagtgaatgacagcga |
251 |
Q |
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| T |
37217051 |
agcatagattaaatttgaagaattcatataaacgaaggagatctaatttcgattcctttagttatgatttgggggatacctatagagtgaatgacggcga |
37216952 |
T |
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| Q |
252 |
catcgtaattgacacacttgtttatgatttaaatgatgtctagcttaattgtgaagataatgatcgagttaggagaaattcggattctacaacgttaaat |
351 |
Q |
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| T |
37216951 |
cattgtaattgacacacttgtttatgatttaaatgatgtctagcttaattgtgaagataatgatcgagttaagagaaattcggattctacaacgttaaat |
37216852 |
T |
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| Q |
352 |
aaagtgttggcgttatagggtgggtagctattaagccagctacgagcaccgttattaaaaaggttatgaaatgtactaaggctaaggggagactagataa |
451 |
Q |
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| T |
37216851 |
aaagtgttggagttatagggtgagtagctattaagccagctacgagcaccgttattaaaaaggttatgaaatgtactaaggctagggggagactagataa |
37216752 |
T |
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| Q |
452 |
ataatgggtgggtgaaagcgcagaattttcggtaagaccaggataacaatgttgagaaagaggttagtgttgattagtttactgggcattttgcgaagag |
551 |
Q |
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| T |
37216751 |
ataatgggtgggtgaaagcgcggaattttcggtaagaccaggataacaatgttgagaaagaggttagtgttgattagtttactgggcattttgcaaagag |
37216652 |
T |
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| Q |
552 |
tttggcaaggattctttcatgtcgtttgggacaatgcttactctcttgtccgccgaaatgacacatctctagtgttggtggatggttgagttaggagtgt |
651 |
Q |
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| T |
37216651 |
tttggcaaggattctttcatgtcgtttgggacaatgcttactctcttgtccgccgaaatgacacatccctagtgttggtagatggttgagttaggagcgt |
37216552 |
T |
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| Q |
652 |
ctgcaagatcccaatgttggaagtgcatgtattgttttttcttctgttgtgcaaag |
707 |
Q |
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| T |
37216551 |
ctgcaagatcccaatgttggaagtgtgtgtattgttttttcttctgctgtgcaaag |
37216496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 2213732 - 2213680
Alignment:
| Q |
28 |
ctcatcctttatataacactgctaaaacacagctattttacagaatcaaaact |
80 |
Q |
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| T |
2213732 |
ctcatcctttatataacactgctaaaacacagctattttacacaatcaaaact |
2213680 |
T |
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