View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548_low_25 (Length: 231)
Name: NF8548_low_25
Description: NF8548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548_low_25 |
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| [»] scaffold0754 (1 HSPs) |
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Alignment Details
Target: scaffold0754 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: scaffold0754
Description:
Target: scaffold0754; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 6749 - 6528
Alignment:
| Q |
1 |
ttttttatcgtatgttaccctgtatgtttaagctcaaaataaccgcatgagacaaagccgatttgagtaagcagccttaattaacacgatttaatgataa |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6749 |
ttttttatcgtatgttaccctatatgtttaagctcaaaataaccgcatgagacaaggccgatttgagtaagcagccttaattaacacgatttaatgataa |
6650 |
T |
|
| Q |
101 |
tgaaagatcttgacacaaatcttaatgtctc--------agaatcaatttcatccataattgtgcttcctgaaactagtattgatatccaaaaagataat |
192 |
Q |
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||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6649 |
tgaaagatcttgacacagatcttaatgtttcaatgctttagaatcaatttcatccataattgtgcttcctgaaactagtattgatatccaaaaagataat |
6550 |
T |
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| Q |
193 |
gaccataggcacatcctttatt |
214 |
Q |
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|||||||||||||||||||||| |
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| T |
6549 |
gaccataggcacatcctttatt |
6528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 22220564 - 22220785
Alignment:
| Q |
1 |
ttttttatcgtatgttaccctgtatgtttaagctcaaaataaccgcatgagacaaagccgatttgagtaagcagccttaattaacacgatttaatgataa |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22220564 |
ttttttatcgtatgttaccctatatgtttaagctcaaaataaccgcatgagacaaggccgatttgagtaagcagccttaattaacacgatttaatgataa |
22220663 |
T |
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| Q |
101 |
tgaaagatcttgacacaaatcttaatgtctc--------agaatcaatttcatccataattgtgcttcctgaaactagtattgatatccaaaaagataat |
192 |
Q |
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||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22220664 |
tgaaagatcttgacacagatcttaatgtttcaatgctttagaatcaatttcatccataattgtgcttcctgaaactagtattgatatccaaaaagataat |
22220763 |
T |
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| Q |
193 |
gaccataggcacatcctttatt |
214 |
Q |
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|||||||||||||||||||||| |
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| T |
22220764 |
gaccataggcacatcctttatt |
22220785 |
T |
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Back To:
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