View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548_low_3 (Length: 541)
Name: NF8548_low_3
Description: NF8548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 21469256 - 21469730
Alignment:
| Q |
1 |
gtgaaagttttcgatggatcttctacaaatgatcaacatgaaagtaatcgttctaacgaagaacaagtcgaagggatgaaacattcatgtccaacatcaa |
100 |
Q |
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| T |
21469256 |
gtgaaagttttcgatggatcttctacaaatgatcaacatgaaagtaatcgttctaacgaagaacaagtcgaagggatgaaacattcatgtccaacatcaa |
21469355 |
T |
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| Q |
101 |
gcagcagcaacacaaatatgaaattgcattactcttctaatagttctacaacactaaagtaactttgaaatagttaataacagcaatgtgactagggaac |
200 |
Q |
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| T |
21469356 |
gcagcagcaacacaaatatgaaattgcattactcttctaatagttctacaacactaaagtaactttgaaatagttaataacagcaatgtgactagggaac |
21469455 |
T |
|
| Q |
201 |
tagaatttcttagcatgagtgatttggtttctatttgattttaagtgcttcagcttcattattattgtttgattgtgtataaggatattttagttttaat |
300 |
Q |
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| T |
21469456 |
tagaatttcttagcatgagtgatttggtttctatttgattttaagtgcttcagcttcataattatggtttgattgtgtataaggatattttagttttaat |
21469555 |
T |
|
| Q |
301 |
aattgtgagatttgaagtaatctttcttcattactttttcttttcttgcaaactatatcaaggaggatatttaaacctttatgatctcat--tatatatg |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
21469556 |
aattgtgagatttgaagtaatctttcttcattactttttcttttcttgcaaactatatcaaggaggatatataaacctttatgatctcattatatatatg |
21469655 |
T |
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| Q |
399 |
taagagtgcagttagctcaagtgccaagatatatcttaacttcctaaggggtttgatccatatactatttaaatc |
473 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21469656 |
taagagtgcagttagctcaagtgccaagatatatcttaacttcataaggggtttgatccatatactatttaaatc |
21469730 |
T |
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