View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8548_low_4 (Length: 508)

Name: NF8548_low_4
Description: NF8548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8548_low_4
NF8548_low_4
[»] chr1 (3 HSPs)
chr1 (19-494)||(17583475-17583951)
chr1 (191-494)||(17591382-17591688)
chr1 (30-190)||(17592585-17592745)
[»] chr5 (22 HSPs)
chr5 (43-494)||(32762975-32763431)
chr5 (19-319)||(28475016-28475320)
chr5 (369-494)||(28474835-28474960)
chr5 (369-489)||(32858229-32858352)
chr5 (396-493)||(32740066-32740163)
chr5 (398-470)||(32651840-32651912)
chr5 (396-472)||(32656093-32656169)
chr5 (373-436)||(32710231-32710294)
chr5 (29-135)||(32755696-32755802)
chr5 (398-487)||(32767882-32767971)
chr5 (29-121)||(32752167-32752259)
chr5 (26-134)||(32768344-32768451)
chr5 (399-494)||(25469550-25469645)
chr5 (339-426)||(25477501-25477588)
chr5 (202-289)||(32858517-32858604)
chr5 (38-135)||(32557430-32557527)
chr5 (230-319)||(32655917-32656007)
chr5 (245-315)||(32557735-32557806)
chr5 (45-126)||(32655655-32655736)
chr5 (72-127)||(32858859-32858914)
chr5 (45-135)||(32748109-32748199)
chr5 (425-469)||(32662009-32662053)
[»] chr7 (5 HSPs)
chr7 (219-494)||(7969736-7970017)
chr7 (369-474)||(37577114-37577219)
chr7 (210-319)||(37577263-37577382)
chr7 (43-135)||(32895072-32895164)
chr7 (22-131)||(37577556-37577665)
[»] chr2 (3 HSPs)
chr2 (164-320)||(16752637-16752805)
chr2 (164-474)||(16756981-16757308)
chr2 (396-487)||(16752463-16752554)
[»] chr4 (2 HSPs)
chr4 (369-467)||(21524552-21524653)
chr4 (202-279)||(2166531-2166607)


Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 494
Target Start/End: Complemental strand, 17583951 - 17583475
Alignment:
Q  19 tcctctagttgcttaccgtcaaatatcagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttcttcacattcattattgtgtctgaac 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17583951 tcctctagttgcttaccgtcaaagatcagacgttgctggtgcactgcaatatcttccttgtcaagaatcttcttcttcacattcattatcgtgtctgaac 17583852  T
Q  119 tctcaaccctcagggggtatgtctttcgagtctgggtcctgatgtagatttgcatctgcacaaaaattgccactaaatcaatgaagaaaacttgagattg 218  Q
    |||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17583851 tctccaccctcagggggtatgtctttccagtctgggtccttatgtagatttgcatctgcacaaaaattgccattaaatcaatgaagaaaacttgagattg 17583752  T
Q  219 atatttcaagaactgatccaaaaatagaaaacactaacaacctttgtttggcatttgaaaaactgaagaataagataaaatgctagagtataaattcaaa 318  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17583751 atatttcaagaactgatccaaaaatagaaaacactaacagccttcgtttggcatttgaaaaactgaagaataagataaaatgctagagtataaattcaaa 17583652  T
Q  319 atat-nnnnnnnnntaacaaaactttaactggggggaaaaaccaaagcattgaaaaggaaataggaggtaccctgggggttatgcaaatatctagcttga 417  Q
    ||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17583651 atataaaaaaaaaataacaaaactttaactggggggaaaaaccaaagcattgaaaaggaaataggaggtaccctgggggttatgcaaatatctagcttga 17583552  T
Q  418 caagttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaaggaacctgttggacgttcttc 494  Q
     | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17583551 gaggttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaaggaacctgttggacgttcttc 17583475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 191 - 494
Target Start/End: Complemental strand, 17591688 - 17591382
Alignment:
Q  191 ctaaatcaatga-agaaaacttgagattgatatttcaagaactgatccaaaaatagaaaacactaacaacctttgtttggcatttgaaaaactgaagaat 289  Q
    |||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17591688 ctaaatcaataatagaaaatttgagattgatatttcaagaactgatccaaaaatagaaaacactaacagcctttgtttggcatttgaaaaactgaagaat 17591589  T
Q  290 aagataaaatgctagagtata--aattcaaaatatnnnnnnnnntaacaaaactttaactggggggaaaaaccaaagcattgaaaaggaaataggaggta 387  Q
    |||||||||||||||||||||  ||||||| | ||         ||| || ||||||| ||| || |||||||||||||  |||||||| ||||||||||    
T  17591588 aagataaaatgctagagtatataaattcaatacataaaagaaaataataagactttaattggaggaaaaaaccaaagcaaagaaaaggagataggaggta 17591489  T
Q  388 ccctgggggttatgcaaatatctagcttgacaagttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaaggaacctgttggac 487  Q
    || || |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  17591488 ccgtgcgggttatgcaaatatctagcttgagaggttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaagtaacttgttggac 17591389  T
Q  488 gttcttc 494  Q
    |||||||    
T  17591388 gttcttc 17591382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 30 - 190
Target Start/End: Complemental strand, 17592745 - 17592585
Alignment:
Q  30 cttaccgtcaaatatcagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttcttcacattcattattgtgtctgaactctcaaccctc 129  Q
    ||||||| |||| |||| ||||||||||||||| | ||||| |||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||     
T  17592745 cttaccgccaaagatcaaacgttgctggtgcaccgggatattttccttgtcaagaatcttcttcttcacatcgattattgtgtctgaactttcaaccctt 17592646  T
Q  130 agggggtatgtctttcgagtctgggtcctgatgtagatttgcatctgcacaaaaattgcca 190  Q
    || |||||  || | | |||||||||| | ||||||||||| |||||||| | ||||||||    
T  17592645 agagggtacctcctactagtctgggtcattatgtagatttgtatctgcaccacaattgcca 17592585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 1e-70; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 43 - 494
Target Start/End: Complemental strand, 32763431 - 32762975
Alignment:
Q  43 atcagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttcttcacattcattattgtgtctgaactctcaaccctcagggggtatgtct 142  Q
    ||||||||||||| ||||| || |||  ||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||| ||||    |||    
T  32763431 atcagacgttgctcgtgcattgggatcccttccttgtcaagaatctttttcttcacattttctattgtgtctgaactctcaaccctcaaggggatcatct 32763332  T
Q  143 ttcgagtctgggtcctgatgtagatttgcatctgcacaaaaattgccactaaatcaatgaag-aaaacttgagattgatat------ttcaagaactgat 235  Q
    ||| |||| ||    | | |||||||||||||||||| | || | ||| ||||||||| ||| |||| |||||| | ||||      |||||||||||||    
T  32763331 ttccagtcaggtcttttacgtagatttgcatctgcaccacaaataccattaaatcaataaaggaaaatttgagactcatatatatatttcaagaactgat 32763232  T
Q  236 ccaaaaatagaaaacactaacaacctttgtttggcatttgaaaaactgaagaata--agataaaatgctagagtataaattcaaaatatnnnnnnnnnta 333  Q
    ||||||||||||||||||||||||||| |||| |   |||||| ||||| ||||   ||||||||  ||||  ||||||||||||| ||         ||    
T  32763231 ccaaaaatagaaaacactaacaaccttagttttgacattgaaacactgatgaatttgagataaaacactag--tataaattcaaaacataaagaaaa-ta 32763135  T
Q  334 acaaaactttaactggggggaaaaaccaaagcattgaaaaggaaataggaggtaccctgggggttatgcaaatatctagcttgacaagttcagaagaacc 433  Q
    |||| ||||||| |||||  |||||| ||||||  |||||||| |||||||||||| ||||||||||||||||||||||||||| | |||| |||||| |    
T  32763134 acaagactttaattgggga-aaaaacaaaagcaaagaaaaggagataggaggtaccatgggggttatgcaaatatctagcttgagaggttcggaagaagc 32763036  T
Q  434 aaatggaatcacaagcaactctgatgaaagagttgctaaaggaacctgttggacgttcttc 494  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||  ||||||||||||||    
T  32763035 aaatggaatcacaagaaactctgatgaaagagttgctaaagcaacacgttggacgttcttc 32762975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 28475320 - 28475016
Alignment:
Q  19 tcctctagttgcttaccgtcaaatatcagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttcttcacattcattattgtgtctgaac 118  Q
    ||||||||||||||||||||    || |||||||||| ||| | || |||  ||||||||||||||||||||||||||||||  | ||| ||||||||||    
T  28475320 tcctctagttgcttaccgtcgttgattagacgttgctcgtgtattgggatcccttccttgtcaagaatcttcttcttcacatcgactatcgtgtctgaac 28475221  T
Q  119 tctcaaccctcagggggtatgtctttcgagtctgggtcctg-atgtagatttgcatctgcacaaaaattgccactaaatcaatgaa-gaaaacttgagat 216  Q
    ||||||||||||||||   |||||||| | || |  || |  | |||||||||||||||||| | || | ||| ||||||| | || ||||| ||||||     
T  28475220 tctcaaccctcaggggaattgtctttccaatcaga-tcttccacgtagatttgcatctgcaccacaaataccattaaatcagtaaaagaaaatttgagac 28475122  T
Q  217 tgatatttcaagaactgatccaaaaatagaaaacactaacaacctttg-tttggcatttgaaaaactgaagaa--taagataaaatgctagagtataaat 313  Q
    ||| |||||||||||| ||||||||||||||||||||||||||||| | |||||||||| ||||||||| |||  | ||||||||||||| |||||||||    
T  28475121 tgacatttcaagaactaatccaaaaatagaaaacactaacaaccttagttttggcatttcaaaaactgatgaatttgagataaaatgctatagtataaat 28475022  T
Q  314 tcaaaa 319  Q
    ||||||    
T  28475021 tcaaaa 28475016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 369 - 494
Target Start/End: Complemental strand, 28474960 - 28474835
Alignment:
Q  369 gaaaaggaaataggaggtaccctgggggttatgcaaatatctagcttgacaagttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttg 468  Q
    |||||||| |||||||||||| |||||||||| |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||| ||||||    
T  28474960 gaaaaggagataggaggtaccatgggggttatacaaatatctagcttgagaggttcggaagaaccaaatggaatcacaagcaactctgatgaaggagttg 28474861  T
Q  469 ctaaaggaacctgttggacgttcttc 494  Q
    |||||| ||||| |||||||||||||    
T  28474860 ctaaagcaacctcttggacgttcttc 28474835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 369 - 489
Target Start/End: Complemental strand, 32858352 - 32858229
Alignment:
Q  369 gaaaaggaaataggaggtaccctgggggttatgcaaatatctagcttgacaagt---tcagaagaaccaaatggaatcacaagcaactctgatgaaagag 465  Q
    |||||||| |||||||||||| |||||| ||||||||||||||||||   | ||   ||| ||||||||||||||||||||||  |||||||||||||||    
T  32858352 gaaaaggagataggaggtaccatgggggctatgcaaatatctagcttatgaggtggttcaaaagaaccaaatggaatcacaaggcactctgatgaaagag 32858253  T
Q  466 ttgctaaaggaacctgttggacgt 489  Q
    ||||||||| || | |||||||||    
T  32858252 ttgctaaagtaaaccgttggacgt 32858229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 396 - 493
Target Start/End: Complemental strand, 32740163 - 32740066
Alignment:
Q  396 gttatgcaaatatctagcttgacaagttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaaggaacctgttggacgttctt 493  Q
    ||||||||||| |||| ||||| | |||||||||||| ||||||||||||||| |||| |||||||||| ||||||||| || ||||||||| |||||    
T  32740163 gttatgcaaatttctaacttgagaggttcagaagaactaaatggaatcacaaggaactttgatgaaagatttgctaaagtaatctgttggacattctt 32740066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 398 - 470
Target Start/End: Original strand, 32651840 - 32651912
Alignment:
Q  398 tatgcaaatatctagcttgacaagttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgct 470  Q
    ||||||||| |||||||| | | |||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  32651840 tatgcaaatttctagcttcagaggttcagaagaaccaaatggaatcacaaggaactctgatgaaagatttgct 32651912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 396 - 472
Target Start/End: Original strand, 32656093 - 32656169
Alignment:
Q  396 gttatgcaaatatctagcttgacaagttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaa 472  Q
    ||||||||||| |||||||||| |  |||| |||||||||||||||||||||||||||| || ||||||||||||||    
T  32656093 gttatgcaaatttctagcttgagagcttcaaaagaaccaaatggaatcacaagcaactccgacgaaagagttgctaa 32656169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 373 - 436
Target Start/End: Complemental strand, 32710294 - 32710231
Alignment:
Q  373 aggaaataggaggtaccctgggggttatgcaaatatctagcttgacaagttcagaagaaccaaa 436  Q
    |||| |||||||||||| |||||||||||||||| ||||||| || ||||||||||||||||||    
T  32710294 aggagataggaggtaccttgggggttatgcaaatttctagctcgagaagttcagaagaaccaaa 32710231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 32755802 - 32755696
Alignment:
Q  29 gcttaccgtcaaatatcagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttcttcacattcattattgtgtctgaactctcaaccct 128  Q
    ||||||||||||| |  ||||| ||||||||||||| |||  ||||||||||| |||| ||||| ||||||| || ||| ||||||||||||| |||| |    
T  32755802 gcttaccgtcaaagaatagacgctgctggtgcactgggatcccttccttgtcatgaattttctttttcacatccagtatcgtgtctgaactcttaaccat 32755703  T
Q  129 caggggg 135  Q
     ||||||    
T  32755702 gaggggg 32755696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 487
Target Start/End: Complemental strand, 32767971 - 32767882
Alignment:
Q  398 tatgcaaatatctagcttgacaagttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaaggaacctgttggac 487  Q
    ||||||||| ||||||||||   |||||||||| |||| |||||||||||| | |||||||| |||||||||||||| || ||| |||||    
T  32767971 tatgcaaatttctagcttgagtggttcagaagagccaactggaatcacaaggagctctgatggaagagttgctaaagtaaactgctggac 32767882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 32752259 - 32752167
Alignment:
Q  29 gcttaccgtcaaatatcagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttcttcacattcattattgtgtctgaactct 121  Q
    ||||||||||||| |  ||||| ||||||||||||| |||  ||||||||||| |||| |||||||||||||  | ||| |||||||||||||    
T  32752259 gcttaccgtcaaagaatagacgctgctggtgcactgggatcccttccttgtcatgaattttcttcttcacatcgagtatcgtgtctgaactct 32752167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 32768451 - 32768344
Alignment:
Q  26 gttgcttaccgtcaaatatcagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttcttcacattcattattgtgtctgaactctcaac 125  Q
    ||||| ||||| ||||||||| |||||| ||||| |||| |||  ||||||||| || || ||||||||||||||| | ||| ||||||||| ||| |||    
T  32768451 gttgcctaccggcaaatatcaaacgttgttggtgtactgggatcccttccttgtaaaaaa-cttcttcttcacattaactatcgtgtctgaaatcttaac 32768353  T
Q  126 cctcagggg 134  Q
    |||||||||    
T  32768352 cctcagggg 32768344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 494
Target Start/End: Complemental strand, 25469645 - 25469550
Alignment:
Q  399 atgcaaatatctagcttgacaagttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaaggaacctgttggacgttcttc 494  Q
    |||||||| |||| || || | |||||||| ||||||||||||||||||| |||| |||||||||||||   |||| |||| ||||||| ||||||    
T  25469645 atgcaaatttctatctcgagaggttcagaaaaaccaaatggaatcacaaggaactttgatgaaagagttttcaaagtaacccgttggacattcttc 25469550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 426
Target Start/End: Complemental strand, 25477588 - 25477501
Alignment:
Q  339 actttaactggggggaaaaaccaaagcattgaaaaggaaataggaggtaccctgggggttatgcaaatatctagcttgacaagttcag 426  Q
    |||||||  ||||||||||| ||||| |  |||||||| |||||||||||| |||||||||||||||| |||| ||||| | ||||||    
T  25477588 actttaataggggggaaaaaacaaagtaaagaaaaggatataggaggtaccatgggggttatgcaaatttctatcttgagaggttcag 25477501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 289
Target Start/End: Complemental strand, 32858604 - 32858517
Alignment:
Q  202 aagaaaacttgagattgatatttcaagaactgatccaaaaatagaaaacactaacaacctttgtttggcatttgaaaaactgaagaat 289  Q
    ||||||| ||||||  |||| ||||| |||||||||||||| || |  |||||||||||||| |||||||||||||||| ||| ||||    
T  32858604 aagaaaaattgagaccgatacttcaaaaactgatccaaaaagagcattcactaacaacctttttttggcatttgaaaaattgacgaat 32858517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 32557430 - 32557527
Alignment:
Q  38 caaatatcagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttcttcacattcattattgtgtctgaactctcaaccctcaggggg 135  Q
    |||| ||||||||||| |||||||||| |||   |||||||||||||||||| | |||||||||   ||| |||||||||||||| ||| ||| ||||    
T  32557430 caaacatcagacgttgttggtgcactgggatcgtttccttgtcaagaatcttatccttcacatttgctatcgtgtctgaactctccaccttcaagggg 32557527  T

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Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 319
Target Start/End: Original strand, 32655917 - 32656007
Alignment:
Q  230 actgatccaaaaatagaaaacactaacaacctttgtttggcatttgaaaaactgaagaa--taagataaaatgctagagtataaattcaaaa 319  Q
    |||||| ||||||||||||||||||||||||| | ||| |||||||||||||||  |||  | ||||| |||||  ||||||||||||||||    
T  32655917 actgatacaaaaatagaaaacactaacaacctat-tttcgcatttgaaaaactgttgaatttcagatataatgccggagtataaattcaaaa 32656007  T

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Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 245 - 315
Target Start/End: Original strand, 32557735 - 32557806
Alignment:
Q  245 gaaaacactaacaacctttgtttggcatttgaaaaactgaagaa--taagataaaatgctagagtataaattc 315  Q
    |||||||||||||| | || |||||||||||||||||||| |||  | |||||||||||||||||||| ||||    
T  32557735 gaaaacactaacaatcctt-tttggcatttgaaaaactgatgaatttgagataaaatgctagagtatatattc 32557806  T

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Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 32655655 - 32655736
Alignment:
Q  45 cagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttcttcacattcattattgtgtctgaactctcaacc 126  Q
    |||||| |||| |||||| | |||  ||||||||||  ||||||||||||||||||  | ||||||||||||||||| ||||    
T  32655655 cagacgctgctcgtgcaccgggatcccttccttgtcctgaatcttcttcttcacatcgagtattgtgtctgaactcttaacc 32655736  T

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Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 32858914 - 32858859
Alignment:
Q  72 ttccttgtcaagaatcttcttcttcacattcattattgtgtctgaactctcaaccc 127  Q
    |||||||||||||||| ||| ||||||||| | ||| ||||||||||||| |||||    
T  32858914 ttccttgtcaagaatcatctccttcacattgactatcgtgtctgaactcttaaccc 32858859  T

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Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 32748199 - 32748109
Alignment:
Q  45 cagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttcttcacattcattattgtgtctgaactctcaaccctcaggggg 135  Q
    ||||||||| ||||| || | |||  ||||||||||  ||| ||| ||||||||||| | ||| ||||||||||||| |||| ||||||||    
T  32748199 cagacgttgttggtggacagggatcccttccttgtcctgaacctttttcttcacattgagtatcgtgtctgaactcttaaccatcaggggg 32748109  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 469
Target Start/End: Original strand, 32662009 - 32662053
Alignment:
Q  425 agaagaaccaaatggaatcacaagcaactctgatgaaagagttgc 469  Q
    |||||||||||||||||||| ||| |||||||| ||| |||||||    
T  32662009 agaagaaccaaatggaatcaaaaggaactctgaggaaggagttgc 32662053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 219 - 494
Target Start/End: Original strand, 7969736 - 7970017
Alignment:
Q  219 atatttcaagaactgatccaaaaa-tagaaaacactaacaacctttgtttggcatttgaaaaactgaagaataaga------taaaatgctagagtataa 311  Q
    ||||||||||||||||| |||||| |||| ||||||| |||||||| ||||||||||| |||||||| ||||  ||      ||||||||||| ||||||    
T  7969736 atatttcaagaactgatacaaaaaatagagaacactagcaacctttttttggcatttgcaaaactgatgaatttgagataaataaaatgctagtgtataa 7969835  T
Q  312 attcaaaatatnnnnnnnnntaacaaaactttaactggggggaaaaaccaaagcattgaaaaggaaataggaggtaccctgggggttatgcaaatatcta 411  Q
    |||||||| ||         ||| || |||| || |||    |||||||||||||  |||||||| |||||   |||| |||||||||||||||| ||||    
T  7969836 attcaaaacattaaagataataataagacttcaattggaca-aaaaaccaaagcaaagaaaaggagatagggcataccgtgggggttatgcaaatgtcta 7969934  T
Q  412 gcttgacaagttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaaggaacctgttggacgttcttc 494  Q
    |||||| | |||||||||||| ||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||    
T  7969935 gcttgagaggttcagaagaacgaaatggaatcacaaggaactctgatgaaagagttgctaaagtaaactgttggacgttcttc 7970017  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 369 - 474
Target Start/End: Complemental strand, 37577219 - 37577114
Alignment:
Q  369 gaaaaggaaataggaggtaccctgggggttatgcaaatatctagcttgacaagttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttg 468  Q
    |||||||| |||||||||||| |||||| ||||||||| ||||||| || | |||||||||||||||||||||||||||| |||||| ||||||||||||    
T  37577219 gaaaaggatataggaggtaccatgggggatatgcaaatttctagctcgagaggttcagaagaaccaaatggaatcacaaggaactctaatgaaagagttg 37577120  T
Q  469 ctaaag 474  Q
     |||||    
T  37577119 ataaag 37577114  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 319
Target Start/End: Complemental strand, 37577382 - 37577263
Alignment:
Q  210 ttgagattgatatttcaagaactgatccaaaaatagaaaa--------cactaacaacctttgtttggcatttgaaaaactgaagaata--agataaaat 299  Q
    |||||| |||||||||||||||| ||||||||||||||||        || ||| |  |||| |||||||||||||||||||| ||||   |||| ||||    
T  37577382 ttgagactgatatttcaagaactaatccaaaaatagaaaattagaaaacagtaatattctttttttggcatttgaaaaactgatgaatttgagattaaat 37577283  T
Q  300 gctagagtataaattcaaaa 319  Q
    ||||||||||||||||||||    
T  37577282 gctagagtataaattcaaaa 37577263  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 32895164 - 32895072
Alignment:
Q  43 atcagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttcttcacattcattattgtgtctgaactctcaaccctcaggggg 135  Q
    ||||||| ||| | |||||||| |||||||||||| ||||||||||||| | | ||||| | |||  |||||||||||| |||| ||||||||    
T  32895164 atcagacattgattgtgcactgggatatcttccttctcaagaatcttctccattacattgaatatcctgtctgaactcttaaccatcaggggg 32895072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 37577665 - 37577556
Alignment:
Q  22 tctagttgcttaccgtcaaatatcagacgttgctggtgcactgcgatatcttccttgtcaagaatcttcttcttcacattcattattgtgtctgaactct 121  Q
    ||||||| ||||||| |||| ||||||||||||   |||| || |||  |||| |||||||||||||||| ||||||||    ||| |||||||||||||    
T  37577665 tctagttccttaccggcaaagatcagacgttgcatatgcattgggatcccttcattgtcaagaatcttctccttcacatcggctatcgtgtctgaactct 37577566  T
Q  122 caaccctcag 131  Q
     || ||||||    
T  37577565 taatcctcag 37577556  T

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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 164 - 320
Target Start/End: Complemental strand, 16752805 - 16752637
Alignment:
Q  164 agatttgcatctgcacaaaaattgccactaaatcaatgaa-gaaaacttgagattgatatttcaagaactgatccaaaa--------atagaaaacacta 254  Q
    |||||||||||||||| | ||||| || ||||||||| || ||||| |||||| ||||||||||||| ||| || ||||        |||||||||||||    
T  16752805 agatttgcatctgcaccacaattgacattaaatcaataaaagaaaatttgagactgatatttcaagagctggtctaaaattagaaaaatagaaaacacta 16752706  T
Q  255 acaacctttgttt-ggcatttgaaaaactgaagaata--agataaaatgctagagtataaattcaaaat 320  Q
    |||||||| |||| ||||| |||||||| |||||||   ||||||| ||||||||||||||||||||||    
T  16752705 acaaccttagttttggcatgtgaaaaaccgaagaatttgagataaattgctagagtataaattcaaaat 16752637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 164 - 474
Target Start/End: Complemental strand, 16757308 - 16756981
Alignment:
Q  164 agatttgcatctgcacaaaaattgccactaaatcaatgaa-gaaaacttgagattgatatttcaagaactgatccaaaaatagaaaa--------cacta 254  Q
    ||||| |||||||||| | | ||| || ||||||||| || ||||| |||||| ||||||||||||||||| ||||||| |||||||        |||||    
T  16757308 agattcgcatctgcaccacagttgacattaaatcaataaaagaaaaattgagactgatatttcaagaactggtccaaaattagaaaattagtagacacta 16757209  T
Q  255 acaacctttgtttggcatttgaaaaactgaagaataaga--taaaatgctagagtataaattcaaaatatnnnnnnnnntaacaaaactttaactggggg 352  Q
    |||| ||| |||| ||||  |||||| ||| ||||  ||  |||| ||||||||||||||||||||| ||         ||| || |||||||  ||       
T  16757208 acaatcttagttttgcatgcgaaaaaatgatgaatttgaaataaattgctagagtataaattcaaaacataaaagataataataagactttaatagga-- 16757111  T
Q  353 gaaaaaccaaagcattgaaaaggaaataggaggtaccctgggggtt---------atgcaaatatctagcttgacaagttcagaagaaccaaatggaatc 443  Q
     ||||| |||||||  |||||||||||||| |||||| ||||||||         ||||||||  | |||| || | ||||||||||||||| |||||||    
T  16757110 -aaaaaacaaagcaaagaaaaggaaataggtggtaccgtgggggttgtgggagttatgcaaattacaagctcgagaggttcagaagaaccaattggaatc 16757012  T
Q  444 acaagcaactctgatgaaagagttgctaaag 474  Q
    ||||| |||||||||||||||||||||||||    
T  16757011 acaaggaactctgatgaaagagttgctaaag 16756981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 396 - 487
Target Start/End: Complemental strand, 16752554 - 16752463
Alignment:
Q  396 gttatgcaaatatctagcttgacaagttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaaggaacctgttggac 487  Q
    ||||||||||| |||||||||| | |||  |||||||||  |||||||| ||| ||||||| |||||||||| |||||| ||||||||||||    
T  16752554 gttatgcaaatttctagcttgagaggtttggaagaaccatttggaatcataaggaactctggtgaaagagttcctaaagtaacctgttggac 16752463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 467
Target Start/End: Complemental strand, 21524653 - 21524552
Alignment:
Q  369 gaaaaggaaataggaggtaccctgggggttatgcaaatatctagcttgaca---agttcagaagaaccaaatggaatcacaagcaactctgatgaaagag 465  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||   |    ||||| ||||||||||||||||||||||  ||||| |||||||||    
T  21524653 gaaaaggagataggaggtaccatgggggttatgcaaatatctagcttatgaggtggttcaaaagaaccaaatggaatcacaaggcactctcatgaaagag 21524554  T
Q  466 tt 467  Q
    ||    
T  21524553 tt 21524552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 279
Target Start/End: Original strand, 2166531 - 2166607
Alignment:
Q  202 aagaaaacttgagattgatatttcaagaactgatccaaaaatagaaaacactaacaacctttgtttggcatttgaaaa 279  Q
    ||||||| |||||| |||||| ||||  ||||| |||||||||||||||| |||||| |||| |||||||||| ||||    
T  2166531 aagaaaatttgagactgatatatcaatgactgagccaaaaatagaaaacaataacaa-ctttttttggcatttcaaaa 2166607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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