View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548_low_5 (Length: 467)
Name: NF8548_low_5
Description: NF8548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 31870208 - 31870666
Alignment:
| Q |
1 |
ccatttcaacctatcaacagtaacatccccacaccacaaaatccctttaaccaattgaccagaaccggccgcgatcagcttcgccgcggttccactataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31870208 |
ccatttcaacctatcaacagtaacatccccacaccacaaaatccctttaaccaattgaccagaaccggccgcgatcagcttcgccgcggttccactataa |
31870307 |
T |
|
| Q |
101 |
tcctccacattaggagccaatgtagtccaataagcagcacatctctcctccatcaattccttcttctccttcacattatccaaatccgccggcgatatct |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31870308 |
tcctccacattaggagccaatgtagtccaataggcagcacatctctcctccatcaattccttcttctccttcacattatccaaatccgcgggcgatatct |
31870407 |
T |
|
| Q |
201 |
ccatcgccaatgaaccatctaaagcttcccctttcttcttggccttctctgaaacctcctgaacagagaaattgctgcattccttcaaaacttcatcaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31870408 |
ccatcgccaatgaaccatctaaagcttcccctttcttcttggccttctctgaaacctcctgaacagagaaattgctgcattccttcaaaacttcatcaag |
31870507 |
T |
|
| Q |
301 |
ctccttcaccaaatcctcttgtcctttcgacgcaatcgttaatccgtagctaagcaaatccgaattatcctcttctttccgacgatctttccgccggaaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31870508 |
ctccttcaccaaatcctcttgtcctttcgacgcaatcgttaatccgtagctaagcaaatccgaattatcctcttctttccgacgacctttccgccggaaa |
31870607 |
T |
|
| Q |
401 |
gataacttactcttttctttttcctcatcgcttgaatcagaatcggaatcattcttctc |
459 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31870608 |
gataacttactcttttctttttcctcatcgcttgaatcagaatcggaatcattcttctc |
31870666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 8851665 - 8851324
Alignment:
| Q |
1 |
ccatttcaacctatcaacagtaacatccccacaccacaaaatccctttaaccaattgaccagaaccggccgcgatcagcttcgccgcggttccactataa |
100 |
Q |
| |
|
||||| ||||||||| | ||||||||| ||||||||||||||||| || | || || ||||| || | || |||| | |||| || || |||||||| |
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| T |
8851665 |
ccattgcaacctatccatagtaacatcaccacaccacaaaatccccttgatcacatgtccagaccccgaagctatcatcctcgcagcagtcccactatac |
8851566 |
T |
|
| Q |
101 |
tcctccacattaggagccaatgtagtccaataagcagcacatctctcctccatcaattccttcttctccttcacatta-tccaaatccgccggcgatatc |
199 |
Q |
| |
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||||||||||| || ||||||||||||||||| || |||||| | ||||||||| |||||||||| |||| || | ||||||||| |||||||| | |
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| T |
8851565 |
tcctccacattcggtgccaatgtagtccaatacgccgcacattgcccctccatcatctccttcttcttcttc-gatgactccaaatccttcggcgatacc |
8851467 |
T |
|
| Q |
200 |
tccatcgccaatgaaccatctaaagcttcccctttcttcttggccttctctgaaacctcctgaacagagaaattgctgcattccttcaaaacttcatcaa |
299 |
Q |
| |
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||| ||||||| ||||| ||| | || || |||||| |||||||| ||||||| ||| ||||| ||||| || || | || ||||| |||| | |
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| T |
8851466 |
tccttcgccaaatttccatccaaaacctctcc---cttcttcgccttctccgaaaccttctgcacagaaaaattactacagttctccaaaatcacatcca |
8851370 |
T |
|
| Q |
300 |
gctccttcaccaaatcctcttgtcctttcgacgcaatcgttaatcc |
345 |
Q |
| |
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|||||||| |||| |||||||||||||||||||| || ||||| |
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|
| T |
8851369 |
actccttcaataaatgttcttgtcctttcgacgcaatagtcaatcc |
8851324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27878328 - 27878369
Alignment:
| Q |
1 |
ccatttcaacctatcaacagtaacatccccacaccacaaaat |
42 |
Q |
| |
|
||||||||| ||||||||||||||||| || ||||||||||| |
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|
| T |
27878328 |
ccatttcaatctatcaacagtaacatcaccgcaccacaaaat |
27878369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 27878417 - 27878466
Alignment:
| Q |
90 |
ttccactataatcctccacattaggagccaatgtagtccaataagcagca |
139 |
Q |
| |
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||||||||||||||||||| || || ||||| || ||||||||||||||| |
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| T |
27878417 |
ttccactataatcctccacgtttggtgccaacgttgtccaataagcagca |
27878466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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