View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548_low_7 (Length: 420)
Name: NF8548_low_7
Description: NF8548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 28054433 - 28054032
Alignment:
| Q |
1 |
gacgacgacggagaaaagtgattcgcacgtgtgtacgtgcaaattaacaagcgatatcgtttgtaattgcaagtgcaggttcgtttgggttggtggttnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
28054433 |
gacgacgacggagaaaagtgattcgcacgtgtgtacgtgcaaattaacaagcgagattgtttgtaattgcaagtgcaggttcgtttgggttggtggttaa |
28054334 |
T |
|
| Q |
101 |
nnnnnnnnn--cagttagagatcatcacggttattttgtgaaactctcaacaagaaagaaaaggagaatgcctcacagagcaacttacttttttcctagg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28054333 |
aaaaaaaaaaacagttagagatcatcacggttattttgtgaaactctcaacaagaaagaaaagga--atgcctcacagagcaacttacttttttcctagg |
28054236 |
T |
|
| Q |
199 |
caatttccagagaaaaggttcgatgaatcttcaaagagtagtacattagatcacgagaacaaaaaatctccagtcaaatctacggatacgactttttgca |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28054235 |
caatttccagagaaaaggttcgatgaatcttcaaagagtagtacattagatcacgagaagaaaaaatctccagtcaaatctacggatacgactttttgca |
28054136 |
T |
|
| Q |
299 |
ttgaaaacgacctgccgaaaagttcaaacactcctaccaaagacaatctcgcaaaaaactctgcggtttcggaacttggtaaaaagtttcgaaatgaaca |
398 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28054135 |
ctgaaaacgacgtgccgaaaagttcaaacactcctaccaaagtcaatctcgcaaaaaactctgcggtttcggaacttggtaaaaagtttcgaaatgaaca |
28054036 |
T |
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| Q |
399 |
gaag |
402 |
Q |
| |
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|||| |
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| T |
28054035 |
gaag |
28054032 |
T |
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