View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8549_high_13 (Length: 248)
Name: NF8549_high_13
Description: NF8549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8549_high_13 |
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| [»] scaffold1079 (1 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 124 - 230
Target Start/End: Original strand, 16899505 - 16899611
Alignment:
| Q |
124 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttc |
223 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16899505 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttc |
16899604 |
T |
|
| Q |
224 |
cctatga |
230 |
Q |
| |
|
||||||| |
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|
| T |
16899605 |
cctatga |
16899611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 124 - 230
Target Start/End: Original strand, 18348020 - 18348126
Alignment:
| Q |
124 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
18348020 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcattttttattccattcataaatctattttcttc |
18348119 |
T |
|
| Q |
224 |
cctatga |
230 |
Q |
| |
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||||||| |
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| T |
18348120 |
cctatga |
18348126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 2692670 - 2692545
Alignment:
| Q |
1 |
acagaaaacaaaagttgattaagatgcctaaataactaaaactgttatacaccttctaaagctgacataaccatttggagctccttgcatgaaaggtgaa |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
2692670 |
acagaaaacaaaagttgattaagatgcctaaataactaaaacagatatacaccttctaaagctgacataaccgtttggagctccttgcttgaaaggtgaa |
2692571 |
T |
|
| Q |
101 |
tttgaaaataaggctgttgctaactg |
126 |
Q |
| |
|
||||||||||| |||||||||||||| |
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|
| T |
2692570 |
tttgaaaataaagctgttgctaactg |
2692545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 126
Target Start/End: Complemental strand, 2679029 - 2678954
Alignment:
| Q |
51 |
accttctaaagctgacataaccatttggagctccttgcatgaaaggtgaatttgaaaataaggctgttgctaactg |
126 |
Q |
| |
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||||||| ||||||||||||||||||||| |||||||| ||||||||||||| | |||||| || |||| |||||| |
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| T |
2679029 |
accttcttaagctgacataaccatttggaactccttgcttgaaaggtgaattcgcaaataatgcagttgataactg |
2678954 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 230
Target Start/End: Complemental strand, 40231035 - 40230928
Alignment:
| Q |
125 |
tgattcgacattaaaagtatattgatttttt-cccaataaccgaatacttttgtctgt-aaatattgcatattttattccattcataaatctattttctt |
222 |
Q |
| |
|
||||||||| |||||||| |||||||||||| |||||||||| ||||||||||||| | ||||| ||||||| ||| | ||| |||||||||||||| |
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| T |
40231035 |
tgattcgacgttaaaagtgtattgatttttttcccaataaccaaatacttttgtctataaaataccacatatttcattgaactcacaaatctattttctt |
40230936 |
T |
|
| Q |
223 |
ccctatga |
230 |
Q |
| |
|
||| |||| |
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|
| T |
40230935 |
cccgatga |
40230928 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 13236471 - 13236365
Alignment:
| Q |
124 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13236471 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcattttttattccattcataaatctattttcttc |
13236372 |
T |
|
| Q |
224 |
cctatga |
230 |
Q |
| |
|
||||||| |
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|
| T |
13236371 |
cctatga |
13236365 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 10404067 - 10404171
Alignment:
| Q |
127 |
attcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttccct |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10404067 |
attcgacattaaaagtatattgattttttcccaataaccgaatacttttgtttgtaaatattatatattttattccattcataaatctattttcttccct |
10404166 |
T |
|
| Q |
227 |
atgat |
231 |
Q |
| |
|
||||| |
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|
| T |
10404167 |
atgat |
10404171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 127 - 230
Target Start/End: Complemental strand, 6352442 - 6352340
Alignment:
| Q |
127 |
attcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttccct |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6352442 |
attcgacattaaaagtatattgattttttcccaataat-gaatacttttgtctgtaaatattacatattttattccattcataaatctattttcttccct |
6352344 |
T |
|
| Q |
227 |
atga |
230 |
Q |
| |
|
|||| |
|
|
| T |
6352343 |
atga |
6352340 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 124 - 229
Target Start/End: Complemental strand, 42203382 - 42203278
Alignment:
| Q |
124 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttc |
223 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| | |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
42203382 |
ctgattcgacattaaaagtatattgaatttttac-aataaccgaacacttttgtctgtaaatattgcatatattattccattcataaatctatttttttc |
42203284 |
T |
|
| Q |
224 |
cctatg |
229 |
Q |
| |
|
| |||| |
|
|
| T |
42203283 |
catatg |
42203278 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1079 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold1079
Description:
Target: scaffold1079; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 124 - 230
Target Start/End: Original strand, 512 - 618
Alignment:
| Q |
124 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttc |
223 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| || | |||||| ||||||| |||||||||||||||||| |
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|
| T |
512 |
ctgattcgacattagaagtatattgatttttcaccactaaccgaatacttttgtctgtaactactatatatttgattccatccataaatctattttcttc |
611 |
T |
|
| Q |
224 |
cctatga |
230 |
Q |
| |
|
||||||| |
|
|
| T |
612 |
cctatga |
618 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 197952 - 197865
Alignment:
| Q |
126 |
gattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatc |
213 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||| |||||| |||||||||| ||| ||||| ||||||| |||||||| |
|
|
| T |
197952 |
gattcgacattaaaagtatattgattctttcccaataaacgaagacttttttctgtaaatactgcgtatttgattccatccataaatc |
197865 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 256387 - 256308
Alignment:
| Q |
126 |
gattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccatt |
205 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||| |||||| |||||||||| ||| ||||| |||||||| |
|
|
| T |
256387 |
gattcgacattaaaagtatattgattctttcccaataaacgaagacttttttctgtaaatactgcgtatttgattccatt |
256308 |
T |
|
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