View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8549_high_18 (Length: 211)
Name: NF8549_high_18
Description: NF8549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8549_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 22 - 176
Target Start/End: Original strand, 51734834 - 51734987
Alignment:
| Q |
22 |
ataaagtaaactcaaagtgatcaagtttattagataggacccnnnnnnnntttacttttattcacctgaaattaagtacagatttatttacaacaatggc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51734834 |
ataaagtaaactcaaagtgatcaagtttattagataggactcaaaaaaa-tttacttttattcacctgaaattaagtacagatttatttacaacaatggc |
51734932 |
T |
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| Q |
122 |
ggactcttaacttgatcttcttcagattgttgagttaaaataagtttttttgttt |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51734933 |
tgactcttaacttgatcttcttcagattgttgagttaaaataagtttttttgttt |
51734987 |
T |
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