View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8549_high_7 (Length: 348)
Name: NF8549_high_7
Description: NF8549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8549_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 48979241 - 48979413
Alignment:
| Q |
50 |
atgaaaagagtagggaggttcatggggttgtgtataagcttggttgaaaagaaaagaatgtattagccacaactctgtttagatccctctaagctttttc |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48979241 |
atgaaaagagtagggaggttcatggggttgtgtataagcttggttgaaaagaaaagaatgtattagccacaactctgtttagatccctctaagatttttc |
48979340 |
T |
|
| Q |
150 |
tctcttcataagtacaatctttctcaaactcattctcatttcaaatgctcattcattcccaaacactagttag |
222 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48979341 |
tctcttcataagtacaatctttctctaactcattctcatttcaaatgctcaatcattcccaaacactagttag |
48979413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 48979472 - 48979536
Alignment:
| Q |
271 |
tggaattgtttcctgccaagaataagtatatacaagaaaataaagattattaatatgttgtacat |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48979472 |
tggaattgtttcctgccaagaataagtatatacaagaaaataaagattattaatatgctgtacat |
48979536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University