View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8549_high_8 (Length: 345)
Name: NF8549_high_8
Description: NF8549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8549_high_8 |
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| [»] scaffold1191 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 89 - 329
Target Start/End: Original strand, 34174365 - 34174605
Alignment:
| Q |
89 |
cacaacagatacagcagcaacaaaccggtctaaaccggaccaaaacccctaagtcagccacgaacacagtagcaaaacagcatcnnnnnnncataaacac |
188 |
Q |
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| T |
34174365 |
cacaacagatacagcagcaacacaccggtctaaaccggaccaaaacccctaagtcagtcacgaacacagtagcaaaacagcaacaaaaaaacataaacac |
34174464 |
T |
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| Q |
189 |
cagcagcagccaagaaccaaaggaaaaacaagagcagcacctaacatataaatacattatccctatctagcatttcgtcttatctccattataataattc |
288 |
Q |
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| T |
34174465 |
cagcagcagccaagaaccaaaggaaaaacaagagcagcacctaacatataaatacattatccctatctagcatttcttcttatctccattataataattc |
34174564 |
T |
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| Q |
289 |
atttcaagagtctcatatcttcttatgaacaaggtcatatg |
329 |
Q |
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| T |
34174565 |
atttcaagagtctcatatcttcttatgaacaaggtcatatg |
34174605 |
T |
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Target: scaffold1191 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1191
Description:
Target: scaffold1191; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 312
Target Start/End: Complemental strand, 498 - 467
Alignment:
| Q |
281 |
aataattcatttcaagagtctcatatcttctt |
312 |
Q |
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| T |
498 |
aataattcatttcaagagtctcatatcttctt |
467 |
T |
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