View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8549_high_9 (Length: 308)
Name: NF8549_high_9
Description: NF8549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8549_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 2625325 - 2625634
Alignment:
| Q |
1 |
ctctgaaactctatctcaaactttccctaatctgtaaggtttcattgataaggtcaccatccctgttattgaaaaagatgacaagatgatctggatgcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2625325 |
ctctgaaactctatctcaaactttccctaatctgtaaggtttcattgataaggtcaccatccctgttactgaaaaagatgacaagatgatctggatgcat |
2625424 |
T |
|
| Q |
101 |
tcttagaatagggagctat----cttttaaggaagcttatcttcatcagtgtcctattggtcagcatatttcatgggtcaaagctatttggcattgtgtt |
196 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
2625425 |
tcttagaatggggagctatatatcttttaaggaagtttatcttcatcagtgtcctattggtcagcatatttcatgggtcaaagctatctggcatattgtt |
2625524 |
T |
|
| Q |
197 |
attccaccttcaaaatctttattgatttggagaagcttgcataataagttacctactgatgacaacttatctgtaagaggttgttatttgtcttcaatgt |
296 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |
|
|
| T |
2625525 |
attccaccttcaaaacctttattgatttggagaagcttgaataataagttacctactgatgacaagttatctacaaaaggttgttatttgtcttcaatgt |
2625624 |
T |
|
| Q |
297 |
gcaatctctg |
306 |
Q |
| |
|
|||||||||| |
|
|
| T |
2625625 |
gcaatctctg |
2625634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 22163087 - 22163027
Alignment:
| Q |
200 |
ccaccttcaaaatctttattgatttggagaagcttgcataataagttacctactgatgaca |
260 |
Q |
| |
|
||||| ||||||||| | |||||||||||||||||||||||||| | || |||||||||| |
|
|
| T |
22163087 |
ccaccatcaaaatctatgatgatttggagaagcttgcataataagctcccaactgatgaca |
22163027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 8499253 - 8499314
Alignment:
| Q |
197 |
attccaccttcaaaatctttattgatttggagaagcttgcataataagttacctactgatga |
258 |
Q |
| |
|
||||||||||| || |||||||||||||||||| | |||| ||||||||||| || ||||| |
|
|
| T |
8499253 |
attccaccttctaagtctttattgatttggagactcatgcacaataagttaccaacagatga |
8499314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University