View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8549_low_1 (Length: 585)

Name: NF8549_low_1
Description: NF8549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8549_low_1
NF8549_low_1
[»] chr3 (28 HSPs)
chr3 (1-279)||(9343823-9344101)
chr3 (1-248)||(9448323-9448570)
chr3 (139-290)||(9494806-9494957)
chr3 (159-290)||(9617481-9617612)
chr3 (141-287)||(41985598-41985744)
chr3 (141-284)||(9695616-9695759)
chr3 (141-292)||(41980819-41980970)
chr3 (149-290)||(9352868-9353009)
chr3 (159-276)||(9655375-9655492)
chr3 (156-259)||(9340669-9340772)
chr3 (156-290)||(9347954-9348088)
chr3 (156-290)||(9369608-9369742)
chr3 (135-218)||(9395298-9395381)
chr3 (155-290)||(9432863-9432998)
chr3 (141-290)||(9407333-9407482)
chr3 (159-276)||(9646382-9646499)
chr3 (141-248)||(9329845-9329952)
chr3 (141-248)||(9336549-9336656)
chr3 (141-287)||(9485969-9486115)
chr3 (141-287)||(13864174-13864320)
chr3 (144-288)||(9425542-9425686)
chr3 (149-186)||(9613925-9613962)
chr3 (191-290)||(9397752-9397851)
chr3 (149-290)||(9377053-9377194)
chr3 (436-486)||(9495121-9495171)
chr3 (197-290)||(9614009-9614102)
chr3 (149-182)||(9348101-9348134)
chr3 (133-186)||(9686754-9686807)
[»] chr6 (11 HSPs)
chr6 (2-286)||(9170782-9171066)
chr6 (141-531)||(7041230-7041612)
chr6 (2-286)||(9159362-9159646)
chr6 (134-300)||(7046796-7046962)
chr6 (135-511)||(7025482-7025878)
chr6 (328-531)||(7046555-7046765)
chr6 (141-287)||(7012784-7012936)
chr6 (135-224)||(7029846-7029935)
chr6 (7-71)||(7013015-7013079)
chr6 (7-82)||(7025940-7026015)
chr6 (462-560)||(7039719-7039817)
[»] chr1 (13 HSPs)
chr1 (146-301)||(235169-235324)
chr1 (147-301)||(8814368-8814522)
chr1 (147-301)||(246823-246977)
chr1 (46-290)||(4439827-4440071)
chr1 (133-301)||(251386-251554)
chr1 (143-297)||(231535-231695)
chr1 (194-290)||(18991171-18991267)
chr1 (146-290)||(4428598-4428742)
chr1 (45-101)||(4428784-4428840)
chr1 (437-485)||(8814661-8814709)
chr1 (435-489)||(231351-231405)
chr1 (436-489)||(246644-246697)
chr1 (436-488)||(234991-235043)
[»] chr2 (1 HSPs)
chr2 (144-290)||(20694304-20694450)
[»] chr5 (2 HSPs)
chr5 (135-288)||(18571077-18571233)
chr5 (14-279)||(33541630-33541895)
[»] chr8 (2 HSPs)
chr8 (32-285)||(44688676-44688929)
chr8 (41-99)||(13170584-13170642)
[»] chr7 (1 HSPs)
chr7 (141-186)||(450111-450156)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 9344101 - 9343823
Alignment:
Q  1 ctcgaatgtccacttagttgctgaacctttggttggtggcggggacaaaaaattcttagtcgagagagagggagagttgttgctagtggacatttatgag 100  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9344101 ctcgaatgtccacttagttattgaacctttggttggtggcggggacaaaaaattcttagtcgagagagagggagagttgttgctagtggacatttatgag 9344002  T
Q  101 tgtttttgtttcgagttcccgggtcctgatgctataagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttagggg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | | ||||||||    
T  9344001 tgtttttgtttcgagttcccgggtcctgatgctataagggttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttagggg 9343902  T
Q  201 atagggttttgttcttggggttggagtgttcgttttctgcttctgctttagatttatgtgtttccaaagggaattgtgt 279  Q
    |||| |||||||||||||||   || ||||||||||||||||||||||  ||||| |||||| | | ||| ||||||||    
T  9343901 atagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatttgtgtgttcctagaggaaattgtgt 9343823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 9448570 - 9448323
Alignment:
Q  1 ctcgaatgtccacttagttgctgaacctttggttggtggcggggacaaaaaattcttagtcgagagagagggagagttgttgctagtggacatttatgag 100  Q
    ||||||||||||||||||||||||||||||| ||| ||| ||||||| |||||||||||| || ||||||||||| ||||||||||||||||||||||||    
T  9448570 ctcgaatgtccacttagttgctgaacctttgattgatggaggggacataaaattcttagttgatagagagggagacttgttgctagtggacatttatgag 9448471  T
Q  101 tgtttttgtttcgagttcccgggtcctgatgctataagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttagggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | | ||||||||    
T  9448470 tgtttttgtttcgagttcccgggtcctgatgctataagggttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttagggg 9448371  T
Q  201 atagggttttgttcttggggttggagtgttcgttttctgcttctgctt 248  Q
    |||| |||||||||||||||   || ||||||||||||||||||||||    
T  9448370 atagtgttttgttcttggggaatgactgttcgttttctgcttctgctt 9448323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 139 - 290
Target Start/End: Original strand, 9494806 - 9494957
Alignment:
Q  139 ggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttggggt-tggagtgttcgttttc 237  Q
    |||| ||||| ||| ||||||||||||||||| ||  |||||||| ||    ||||||||||||||||||||||||||||||  |||| |||||||||||    
T  9494806 ggttaatgtgcttaggcttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatgga-tgttcgttttc 9494904  T
Q  238 tgcttctgctttagatttatgtgtttccaaagggaattgtgtgatctttattg 290  Q
    |||||||||||  ||||| || |||||||||||||||||||| ||||||||||    
T  9494905 tgcttctgcttctgatttgtgcgtttccaaagggaattgtgtcatctttattg 9494957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 159 - 290
Target Start/End: Original strand, 9617481 - 9617612
Alignment:
Q  159 atgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttc-ttggggttggagtgttcgttttctgcttctgctttagatttat 257  Q
    ||||||| |||||||| |||||||||||    | |||||||||||||||||||||| ||| |  |||| ||||| |||||||||||||||| |||||| |    
T  9617481 atgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatgga-tgttcattttctgcttctgcttcagatttgt 9617579  T
Q  258 gtgtttccaaagggaattgtgtgatctttattg 290  Q
    |||||||||||||||||||||| ||||||||||    
T  9617580 gtgtttccaaagggaattgtgtcatctttattg 9617612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 141 - 287
Target Start/End: Complemental strand, 41985744 - 41985598
Alignment:
Q  141 ttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttgggg-ttggagtgttcgttttctg 239  Q
    |||||||||| |  |||||||||||||||||||| ||||| |||||  | |||||||||||||| |||||||||||||||  |||| |||||||||||||    
T  41985744 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgga-tgttcgttttctg 41985646  T
Q  240 cttctgctttagatttatgtgtttccaaagggaattgtgtgatcttta 287  Q
    |||||||||  ||||| | ||||  |||||| |||||||| |||||||    
T  41985645 cttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatcttta 41985598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 141 - 284
Target Start/End: Original strand, 9695616 - 9695759
Alignment:
Q  141 ttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttggggttggagtgttcgttttctgc 240  Q
    ||||||| || | ||||||||||||||||||||||||||| |||||  | | ||||||||||||||||||||| ||||||   || |||||||| |||||    
T  9695616 ttgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcgttctctgc 9695715  T
Q  241 ttctgctttagatttatgtgtttccaaagggaattgtgtgatct 284  Q
     ||||||| ||| || |||||| | || ||||||||||| ||||    
T  9695716 atctgcttcagagttgtgtgttgcaaatgggaattgtgtcatct 9695759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 141 - 292
Target Start/End: Complemental strand, 41980970 - 41980819
Alignment:
Q  141 ttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttgggg-ttggagtgttcgttttctg 239  Q
    |||||||||||| ||||| | |||| |||||||| ||||| |||||  | |||||||||||||| |||||||||||||||  |||| |||||||||| ||    
T  41980970 ttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatgga-tgttcgttttttg 41980872  T
Q  240 cttctgctttagatttatgtgtttccaaagggaattgtgtgatctttattggt 292  Q
    ||||||||| | |||| | ||||  |||||| |||||| | |||||| |||||    
T  41980871 cttctgcttcaaatttgtctgttgtcaaaggaaattgtattatctttgttggt 41980819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 149 - 290
Target Start/End: Complemental strand, 9353009 - 9352868
Alignment:
Q  149 tttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttgggg-ttggagtgttcgttttctgcttctgct 247  Q
    |||||||||||||||| |||||||||||||||||||||    |  ||||||| ||||||||||||  |||||  |||| ||||||||||||||||||| |    
T  9353009 tttaagcttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtgga-tgttcgttttctgcttctggt 9352911  T
Q  248 ttagatttatgtgtttccaaagggaattgtgtgatctttattg 290  Q
    |  ||| | ||| || ||||||| |||||||| ||||||||||    
T  9352910 tgggatctgtgtcttcccaaaggaaattgtgtcatctttattg 9352868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 9655375 - 9655492
Alignment:
Q  159 atgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttggg-gttggagtgttcgttttctgcttctgctttagatttat 257  Q
    |||||||||||||||| |||||||||||    | ||||||||||||||||||||| ||||| |  ||| |||||||||||||| || ||||  ||||| |    
T  9655375 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaagga-tgttcgttttctgcatcagcttcggatttgt 9655473  T
Q  258 gtgtttccaaagggaattg 276  Q
    |||||||||||||||||||    
T  9655474 gtgtttccaaagggaattg 9655492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 9340772 - 9340669
Alignment:
Q  156 ttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttc-ttggggttggagtgttcgttttctgcttctgctttagatt 254  Q
    |||||||||||||||||||||||||||||||    | ||| |||||||||||||| ||| |||||  |||| |||||||||||||||||||||| ||||     
T  9340772 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggatagggtttttttcattgggcgtgga-tgttcgttttctgcttctgcttcagatc 9340674  T
Q  255 tatgt 259  Q
    |||||    
T  9340673 tatgt 9340669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 156 - 290
Target Start/End: Complemental strand, 9348088 - 9347954
Alignment:
Q  156 ttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttc-ttggggttggagtgttcgttttctgcttctgctttagatt 254  Q
    |||||||||||||||||||||||||||||||      ||| ||||||||| |||| ||| |||||  |||| |||||||||||||||||||||| ||||     
T  9348088 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtgga-tgttcgttttctgcttctgcttcagatc 9347990  T
Q  255 tatgtgtttccaaagggaattgtgtgatctttattg 290  Q
    ||||| || | ||||| ||||||||  |||||||||    
T  9347989 tatgtattccgaaaggaaattgtgtcgtctttattg 9347954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 156 - 290
Target Start/End: Complemental strand, 9369742 - 9369608
Alignment:
Q  156 ttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttc-ttggggttggagtgttcgttttctgcttctgctttagatt 254  Q
    |||||||||||||||||||||||||||||||      ||| ||||||||| |||| ||| |||||  |||| |||||||||||||||||||||| ||||     
T  9369742 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtgga-tgttcgttttctgcttctgcttcagatc 9369644  T
Q  255 tatgtgtttccaaagggaattgtgtgatctttattg 290  Q
    ||||| || | ||||| ||||||||  |||||||||    
T  9369643 tatgtattccgaaaggaaattgtgtcgtctttattg 9369608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 9395381 - 9395298
Alignment:
Q  135 taagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttgg 218  Q
    ||||| |||||||||||| ||||||||||||| |||| ||||||||||||||  ||| |||||| |||  ||||||||||||||    
T  9395381 taaggattgatgtgtttaggcttgatgagaagcagaaaaagtgggtgaagttgactaatttaggagatttggttttgttcttgg 9395298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 155 - 290
Target Start/End: Complemental strand, 9432998 - 9432863
Alignment:
Q  155 cttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttggggttggagtgttcgttttctgcttctgctttagatt 254  Q
    |||||||||||||||| ||||||||||||| |    | |||||| ||||||||||||||| | ||| | || | ||| ||||||||||| || |  ||||    
T  9432998 cttgatgagaaggagaggaagtgggtgaagatcaagaatttaggagatagggttttgttcatagggcttgaatattccttttctgcttcagcctcggatt 9432899  T
Q  255 tatgtgtttccaaagggaattgtgtgatctttattg 290  Q
    | ||||||||| ||||||||||| | ||||||||||    
T  9432898 tgtgtgtttccgaagggaattgtatcatctttattg 9432863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 141 - 290
Target Start/End: Complemental strand, 9407482 - 9407333
Alignment:
Q  141 ttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttggggt-tggagtgttcgttttctg 239  Q
    ||||||||||||  ||||| |||||| | || |  |||||||||||    |||||||||||||||||||||||||| | |  |||| ||||| |||||||    
T  9407482 ttgatgtgtttagacttgacgagaagaataaaagatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaatgga-tgttcattttctg 9407384  T
Q  240 cttctgctttagatttatgtgtttccaaagggaattgtgtgatctttattg 290  Q
    |||| ||||  ||||| |||||| ||||||||||||||||  |||||||||    
T  9407383 cttcagcttcggatttgtgtgttgccaaagggaattgtgtcttctttattg 9407333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 9646382 - 9646499
Alignment:
Q  159 atgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttg-ttcttggggttggagtgttcgttttctgcttctgctttagatttat 257  Q
    |||||||||||||||| |||||||||||    | ||||||||||||||||||| || |||| |  ||| |||||||||||||| || ||||  ||||| |    
T  9646382 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgttttttggcgaagga-tgttcgttttctgcatcagcttcggatttgt 9646480  T
Q  258 gtgtttccaaagggaattg 276  Q
    |||||||||||||||||||    
T  9646481 gtgtttccaaagggaattg 9646499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 141 - 248
Target Start/End: Complemental strand, 9329952 - 9329845
Alignment:
Q  141 ttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttgggg-ttggagtgttcgttttctg 239  Q
    |||||||||||| |||||||||||| ||||| | |||||| |||||  | | |||||| |||| ||||||||||||||||  |||| | |||||||||||    
T  9329952 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttggggaatgga-tattcgttttctg 9329854  T
Q  240 cttctgctt 248  Q
    |||||||||    
T  9329853 cttctgctt 9329845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 141 - 248
Target Start/End: Complemental strand, 9336656 - 9336549
Alignment:
Q  141 ttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttgggg-ttggagtgttcgttttctg 239  Q
    |||||||||||| |||||||||||| ||||| | |||||| ||| |  | | |||||| |||| ||||||||||||||||  |||| |||||||||||||    
T  9336656 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatgga-tgttcgttttctg 9336558  T
Q  240 cttctgctt 248  Q
    |||||||||    
T  9336557 cttctgctt 9336549  T

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Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 141 - 287
Target Start/End: Original strand, 9485969 - 9486115
Alignment:
Q  141 ttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttggggttggagtgttcgttttctgc 240  Q
    |||||||||||| |||||||||||||||||||||||||||| || |    | ||| ||||||| ||||||||| ||||||   || ||| | ||||||||    
T  9485969 ttgatgtgtttaggcttgatgagaaggagaagaagtgggtggaggtgagaaatttgggggatatggttttgtttttgggggaagaatgtgctttttctgc 9486068  T
Q  241 ttctgctttagatttatgtgtttccaaagggaattgtgtgatcttta 287  Q
    ||| ||||  ||||| ||| ||  ||| ||||| |||||||| ||||    
T  9486069 ttcggcttcggatttgtgtattggcaatgggaactgtgtgatattta 9486115  T

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Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 141 - 287
Target Start/End: Complemental strand, 13864320 - 13864174
Alignment:
Q  141 ttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttggggttggagtgttcgttttctgc 240  Q
    |||||||||||| ||||||||||| |||||| ||||||||| || |    | ||| ||||||||||||||||| ||||||   || ||| | ||||| ||    
T  13864320 ttgatgtgtttaggcttgatgagagggagaaaaagtgggtggaggtgagaaatttgggggatagggttttgtttttgggggaagattgtgctttttccgc 13864221  T
Q  241 ttctgctttagatttatgtgtttccaaagggaattgtgtgatcttta 287  Q
    ||| ||||||||||| ||| ||  ||| ||||| |||||||| ||||    
T  13864220 ttcagctttagatttgtgtattggcaatgggaactgtgtgatattta 13864174  T

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Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 288
Target Start/End: Complemental strand, 9425686 - 9425542
Alignment:
Q  144 atgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttggggt-tggagtgttcgttttctgctt 242  Q
    |||||||||  ||||| |||||| | || || |||||||||||    |||||| || |||||||||||||||| | |  |||| ||||| ||||||||||    
T  9425686 atgtgtttagacttgacgagaagaataaaaaatgggtgaagttgatgagtttaaggaatagggttttgttctttgtgaatgga-tgttcattttctgctt 9425588  T
Q  243 ctgctttagatttatgtgtttccaaagggaattgtgtgatctttat 288  Q
    | ||||  ||||| |||||| |||||||||||||||| ||||||||    
T  9425587 cagcttcggatttgtgtgttgccaaagggaattgtgtcatctttat 9425542  T

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Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 9613925 - 9613962
Alignment:
Q  149 tttaagcttgatgagaaggagaagaagtgggtgaagtt 186  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9613925 tttaagcttgatgagaaggagaagaagtgggtgaagtt 9613962  T

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Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 290
Target Start/End: Complemental strand, 9397851 - 9397752
Alignment:
Q  191 agtttaggggatagggttttgttcttggggt-tggagtgttcgttttctgcttctgctttagatttatgtgtttccaaagggaattgtgtgatctttatt 289  Q
    ||||||||||||||||| |||||||| | |  |||| ||||| ||||| ||||| ||||| ||||| |||||| ||||||||||||||||  ||||||||    
T  9397851 agtttaggggatagggtcttgttctttgtgaatgga-tgttcattttccgcttcagctttggatttgtgtgttgccaaagggaattgtgtcgtctttatt 9397753  T

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Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 290
Target Start/End: Complemental strand, 9377194 - 9377053
Alignment:
Q  149 tttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttggggt-tggagtgttcgttttctgcttctgct 247  Q
    |||||||||||||||||   ||||||||||| ||||||    |  |||||||||||| |||||||  |||||  |||| ||||||||| |||||||||||    
T  9377194 tttaagcttgatgagaacaggaagaagtgggagaagttgaagaaattaggggataggattttgtttgtggggagtgga-tgttcgtttcctgcttctgct 9377096  T
Q  248 ttagatttatgtgtttccaaagggaattgtgtgatctttattg 290  Q
    |  ||| | ||| || ||||||| |||||||| ||||||||||    
T  9377095 tgggatctgtgtcttcccaaaggaaattgtgtcatctttattg 9377053  T

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Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 486
Target Start/End: Original strand, 9495121 - 9495171
Alignment:
Q  436 agtatgttattttgcatcaaaaggtttctaatgtgattgtgatatagcttt 486  Q
    |||||||||| |||||| ||||| ||| |||||||||||||||||||||||    
T  9495121 agtatgttatcttgcattaaaagctttttaatgtgattgtgatatagcttt 9495171  T

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Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 290
Target Start/End: Original strand, 9614009 - 9614102
Alignment:
Q  197 ggggatagggttttgttcttggggt-tggagtgttcgttttctgcttctgctttagatttatgtgtttccaaagggaattgtgtgatctttattg 290  Q
    ||||||| |||||| |||||||||  |||| ||||| |||||||||||||||| |||| | ||| || ||||||| |||||||| ||||||||||    
T  9614009 ggggatatggtttttttcttggggagtgga-tgttcattttctgcttctgcttcagatctgtgtcttaccaaaggaaattgtgttatctttattg 9614102  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 9348134 - 9348101
Alignment:
Q  149 tttaagcttgatgagaaggagaagaagtgggtga 182  Q
    ||||| ||||||||||||||||||||||||||||    
T  9348134 tttaaacttgatgagaaggagaagaagtgggtga 9348101  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 9686807 - 9686754
Alignment:
Q  133 tataagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtt 186  Q
    ||||||| ||||||| || | |||||||||||| |||||||||||||| |||||    
T  9686807 tataaggtttgatgtattcaggcttgatgagaacgagaagaagtgggtcaagtt 9686754  T

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Target: chr6 (Bit Score: 101; Significance: 9e-50; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 2 - 286
Target Start/End: Complemental strand, 9171066 - 9170782
Alignment:
Q  2 tcgaatgtccacttagttgctgaacctttggttggtggcggggacaaaaaattcttagtcgagagagagggagagttgttgctagtggacatttatgagt 101  Q
    |||| |||||| |||||||||||||||||||||||||| ||| |||  ||||||||||| ||||| |||||||| |||||| ||| |||| ||||||| |    
T  9171066 tcgagtgtccatttagttgctgaacctttggttggtggtgggaacatgaaattcttagtggagagcgagggagatttgttgttagcggacgtttatgatt 9170967  T
Q  102 gtttttgtttcgagttcccgggtcctgatgctataagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttagggga 201  Q
    || ||||| | ||  |      |  |||| || ||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||| | |||||||||||    
T  9170966 gtctttgtattgatct------taatgatcctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttagggga 9170873  T
Q  202 tagggttttgttcttggggttggag------tgttcgttttctgcttctgctttagatttatgtgtttccaaagggaattgtgtgatcttt 286  Q
    ||||||||||||||||||||||| |      | ||||||||||| |||||||| |||||| ||||||||| ||||||||||| | ||||||    
T  9170872 tagggttttgttcttggggttggggttggtatattcgttttctgtttctgcttcagatttgtgtgtttcccaagggaattgtatcatcttt 9170782  T

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Target: chr6; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 141 - 531
Target Start/End: Complemental strand, 7041612 - 7041230
Alignment:
Q  141 ttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttggggttggagtgttcgttttctgc 240  Q
    ||||| ||||||| ||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    |  |||||||| ||||     
T  7041612 ttgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgt 7041513  T
Q  241 ttctgctttagatttatgtgtttccaaagggaattgtgtgatctttattggtaatatcttcgagcgaaatatgat-atcgaaatgtgagagctatgtttt 339  Q
    ||||||||  ||||| || ||| |||||||||||||||| ||||||| |  || ||||          || || | ||| |||| ||| || | | ||||    
T  7041512 ttctgcttcggatttgtgcgttgccaaagggaattgtgtcatctttagttatagtatc----------atctgttcatctaaatctgaaagttgtatttt 7041423  T
Q  340 ggacttggatcaaggtcagctttcagctttggtcgatcatcttgaatattccaacttattctggccacctcagaggtggacggaagctcgttaccaagta 439  Q
    ||||||||||||||||| || |||  || |    ||| ||| ||||||||||||||| |||||||||||||  | |||||    |  |||||| ||||||    
T  7041422 ggacttggatcaaggtcggcattcgcctctatctgattatcctgaatattccaacttgttctggccacctccaaagtggatctgatttcgttatcaagta 7041323  T
Q  440 tgttattttgcatcaaaaggtttctaatgtgattgtgata-tagctttattatgattaatttagttattagactgaaatacacttttcaacta 531  Q
    |||||| || || | ||| |||||||||||||||||||||  ||||||||| |||||||||||||| |||||||| |||| ||||||||||||    
T  7041322 tgttatcttccagcgaaaagtttctaatgtgattgtgatacaagctttattgtgattaatttagtttttagactggaataaacttttcaacta 7041230  T

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Target: chr6; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 2 - 286
Target Start/End: Original strand, 9159362 - 9159646
Alignment:
Q  2 tcgaatgtccacttagttgctgaacctttggttggtggcggggacaaaaaattcttagtcgagagagagggagagttgttgctagtggacatttatgagt 101  Q
    |||| |||||| ||||| |||||||||||||||||||| ||| ||| |||||||||||| ||||| |||||||| |||||| ||  |||   |||||| |    
T  9159362 tcgagtgtccatttagtggctgaacctttggttggtggtgggaacataaaattcttagtggagagcgagggagatttgttgttatcggaggcttatgatt 9159461  T
Q  102 gtttttgtttcgagttcccgggtcctgatgctataagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttagggga 201  Q
    || || || | ||  |      |  |||| || ||||| ||||| ||||||||||| | ||||||||||||||||||||||| ||| | |||||||||||    
T  9159462 gtcttagtattgatct------taatgatcctgtaaggattgatttgtttaagcttaacgagaaggagaagaagtgggtgaaattaacgagtttagggga 9159555  T
Q  202 tagggttttgttcttggggttggag------tgttcgttttctgcttctgctttagatttatgtgtttccaaagggaattgtgtgatcttt 286  Q
    ||||||||||||||||||||||| |      | ||||||||||| |||||||| |||||| ||||||||||||||||||||| | ||||||    
T  9159556 tagggttttgttcttggggttggggttggtatattcgttttctgtttctgcttcagatttgtgtgtttccaaagggaattgtatcatcttt 9159646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 134 - 300
Target Start/End: Complemental strand, 7046962 - 7046796
Alignment:
Q  134 ataagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttggggttggagtgttcgt 233  Q
    ||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||  ||||||||||||||| |  | |||||||    
T  7046962 ataagtgttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttggggataaaatgttcgt 7046863  T
Q  234 tttctgcttctgctttagatttatgtgtttccaaagggaattgtgtgatctttattggtaatatctt 300  Q
    |||||||||||  || |||||| | |||| |||||||||||||||||||| ||| || | |||||||    
T  7046862 tttctgcttctttttcagatttgtatgttgccaaagggaattgtgtgatcattagtgctgatatctt 7046796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 135 - 511
Target Start/End: Complemental strand, 7025878 - 7025482
Alignment:
Q  135 taagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttggggttggag------tg 228  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||  | |||||||| ||||||||||||||||||||||||| |      ||    
T  7025878 taaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttggggttggggttggtatg 7025779  T
Q  229 ttcgttttctgcttctgctttagatttatgtgtttccaaagggaattgtgtgatctttattggtaatatcttcgagcgaaata-------tgatatcgaa 321  Q
    |||||||||||||| ||||| |||||| |||||| |||||||||||| ||| ||||||| |  | ||||||| ||   | |||       ||| |||  |    
T  7025778 ttcgttttctgcttgtgcttcagatttgtgtgttgccaaagggaattctgtcatctttaataattatatctttgaatcacataggccacttga-atctga 7025680  T
Q  322 atgtgagagctatgttttggacttggatcaaggtcagctttcagctttggt-cgatcatcttgaatattccaacttattctggccacct-cagaggtgga 419  Q
    |||| ||   ||||||||||||||||||| ||||| || ||| ||||| || |||| ||| ||||||||||||||| |||||||||||| |||| |||||    
T  7025679 atgtaaggaatatgttttggacttggatctaggtcggcattc-gcttttgtccgattatcctgaatattccaacttgttctggccacctccaga-gtgga 7025582  T
Q  420 cggaagctcgttaccaagtatgttattttgcatcaaaaggtttct--------aatgtgattgtgatatagctttattatgattaatttagttattagac 511  Q
        | |||||||| | ||| ||||| ||||||||||||||||||        || |||| | |||||||| ||||||||||||||||||||| ||||||    
T  7025581 tccgacctcgttacgatgtaagttatcttgcatcaaaaggtttctactttccaaacgtgactatgatatagttttattatgattaatttagttgttagac 7025482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 328 - 531
Target Start/End: Complemental strand, 7046765 - 7046555
Alignment:
Q  328 gagctatgttttggacttggatcaaggtcagctttcagctttggt-cgatcatcttgaatattccaacttattctggccacctcagaggtggacggaagc 426  Q
    ||||||||||||||||||||||||||||  |||| | ||||| || ||||  || ||||||||||||||| || ||||||||||  | |||||   |||     
T  7046765 gagctatgttttggacttggatcaaggttggcttcc-gcttttgtgcgattctcctgaatattccaacttgttttggccacctccaaagtggatctaagt 7046667  T
Q  427 tcgttaccaagtatgttatt------ttgcatcaaaaggtttctaatgtgattgtgatatagctttattatgattaatttagttattagact-gaaatac 519  Q
    ||||||||||||||||||||      ||||||  |||||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||| ||||||     
T  7046666 tcgttaccaagtatgttattgttatcttgcattgaaaggtttctaatgtgatagtgatatagctttactatgcttaatttagttgttagactggaaataa 7046567  T
Q  520 acttttcaacta 531  Q
    ||||||| ||||    
T  7046566 acttttcgacta 7046555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 141 - 287
Target Start/End: Complemental strand, 7012936 - 7012784
Alignment:
Q  141 ttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttggggttggag------tgttcgtt 234  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||  | |||||||| |||||| |||||||||||||||||| |      ||||||||    
T  7012936 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggggttggggttggtatgttcgtt 7012837  T
Q  235 ttctgcttctgctttagatttatgtgtttccaaagggaattgtgtgatcttta 287  Q
    |||||| | |||||  ||||| |||||| |||||||||||| ||| |||||||    
T  7012836 ttctgcctgtgcttcggatttgtgtgttgccaaagggaattctgtcatcttta 7012784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 7029935 - 7029846
Alignment:
Q  135 taagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttggggttgg 224  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||  | ||||| ||||||||||||||||||||||||||||    
T  7029935 taaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttggggttgg 7029846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 7013079 - 7013015
Alignment:
Q  7 tgtccacttagttgctgaacctttggttggtggcggggacaaaaaattcttagtcgagagagagg 71  Q
    |||||| ||||| ||||||||||||||||||||||||||||  ||||||||||| ||||| ||||    
T  7013079 tgtccaattagtggctgaacctttggttggtggcggggacatgaaattcttagtggagagcgagg 7013015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 7026015 - 7025940
Alignment:
Q  7 tgtccacttagttgctgaacctttggttggtggcggggacaaaaaattcttagtcgagagagagggagagttgttg 82  Q
    |||||| ||||| |||||||||||| |||| ||||||||||  ||||||||||| ||||| ||||| || ||||||    
T  7026015 tgtccaattagtggctgaacctttgattggcggcggggacatgaaattcttagtggagagcgagggggatttgttg 7025940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 560
Target Start/End: Complemental strand, 7039817 - 7039719
Alignment:
Q  462 tctaatgtgattgtgatatagctttattatgattaatttagttattagactgaaatacacttttcaactagtagttgtagaaaaggaataattcaaatg 560  Q
    |||||| |||||||||| |||||||||| || ||||||||||| ||||||   |||| |||||||||||| || || ||||| | ||| |||| |||||    
T  7039817 tctaatatgattgtgatgtagctttattgtgcttaatttagttgttagaccagaataaacttttcaactattacttatagaacaagaaaaattgaaatg 7039719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 146 - 301
Target Start/End: Complemental strand, 235324 - 235169
Alignment:
Q  146 gtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttggggttggagtgttcgttttctgcttctg 245  Q
    |||||||||||| |||| |||||||||||||||||||||||  | | |||||||||||| ||||| ||||||||||||   |||||||||||||||||||    
T  235324 gtgtttaagcttaatgaaaaggagaagaagtgggtgaagttggcaaatttaggggatagagttttcttcttggggttgctatgttcgttttctgcttctg 235225  T
Q  246 ctttagatttatgtgtttccaaagggaattgtgtgatctttattggtaatatcttc 301  Q
    |||  ||||| |||||| ||||||||||||  || ||| |||| | ||||||||||    
T  235224 cttcggatttgtgtgttcccaaagggaatttagtcatcattatggataatatcttc 235169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 147 - 301
Target Start/End: Original strand, 8814368 - 8814522
Alignment:
Q  147 tgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttggggttggagtgttcgttttctgcttctgc 246  Q
    ||||||||||| | || |||||||||||||||||||||||  | | |||||||||||| |||||||| |||||||    |||||| ||||||||||||||    
T  8814368 tgtttaagcttaacgaaaaggagaagaagtgggtgaagttggcgaatttaggggatagagttttgtttttggggtccttgtgttcattttctgcttctgc 8814467  T
Q  247 tttagatttatgtgtttccaaagggaattgtgtgatctttattggtaatatcttc 301  Q
    ||| ||||| |||||| |||||||||||||||||||| |||| | | ||||||||    
T  8814468 tttggatttgtgtgttcccaaagggaattgtgtgatcattatggatgatatcttc 8814522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 147 - 301
Target Start/End: Complemental strand, 246977 - 246823
Alignment:
Q  147 tgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttggggttggagtgttcgttttctgcttctgc 246  Q
    ||||||||||| |||  | ||||||||| |||||||||||  ||| |||||| ||||  ||||||||||||||||||   || || ||||||||||||||    
T  246977 tgtttaagcttaatgcaagggagaagaaatgggtgaagttggctaatttaggagatacagttttgttcttggggttgttctggtcattttctgcttctgc 246878  T
Q  247 tttagatttatgtgtttccaaagggaattgtgtgatctttattggtaatatcttc 301  Q
    ||| ||||| ||||||  ||||||||||||||| ||| |||| | ||||||||||    
T  246877 tttggatttgtgtgttcacaaagggaattgtgtcatcattatggataatatcttc 246823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 46 - 290
Target Start/End: Complemental strand, 4440071 - 4439827
Alignment:
Q  46 caaaaaattcttagtcgagagagagggagagttgttgctagtggacatttatgagtgtttttgtttcgagttcccgggtcctgatgctataagggttgat 145  Q
    ||||||||||||||| ||||| ||||| | |||| ||| ||||||||| |||||||||||  |||| || | | | |||   |||| | ||||| || ||    
T  4440071 caaaaaattcttagtggagagtgagggtgcgttgctgcgagtggacatctatgagtgtttaggttttgattactccggtaaggatgttttaaggattaat 4439972  T
Q  146 gtgtttaagcttgatgagaaggagaagaagtggg-tgaagttatctagtttaggggatagggttttgttcttggggt-tggagtgttcgttttctgcttc 243  Q
    ||||||| | ||||||||||||||   || |||| |||  | ||  ||||| || |||||||||||||| ||||||  |||| |||||||||||||||||    
T  4439971 gtgtttaggtttgatgagaaggagtgtaaatgggctgatttgatg-agtttgggagatagggttttgtttttggggaatgga-tgttcgttttctgcttc 4439874  T
Q  244 tgctttagatttatgtgtttccaaagggaattgtgtgatctttattg 290  Q
    |||||  ||||| |||||||| |||||||||||||| ||||||||||    
T  4439873 tgcttcggatttgtgtgtttctaaagggaattgtgtcatctttattg 4439827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 133 - 301
Target Start/End: Original strand, 251386 - 251554
Alignment:
Q  133 tataagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttggggttggagtgttcg 232  Q
    ||||||| || | |||||||||||| |||| ||||| ||||||||||| |||||  | | | |||||||||| |||||||||||||||| |   |||||     
T  251386 tataaggattaacgtgtttaagcttaatgaaaaggaaaagaagtgggtaaagttggcgaatataggggatagagttttgttcttggggtggctatgttca 251485  T
Q  233 ttttctgcttctgctttagatttatgtgtttccaaagggaattgtgtgatctttattggtaatatcttc 301  Q
    ||||||| |||||| |  ||||| ||||||   ||| |||||||||||||| |||| | ||||||||||    
T  251486 ttttctgtttctgcatcggatttgtgtgttcggaaacggaattgtgtgatcattatggataatatcttc 251554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 143 - 297
Target Start/End: Complemental strand, 231695 - 231535
Alignment:
Q  143 gatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttggggttggagtgttcgtt------tt 236  Q
    ||||||||||||||  |||  ||||||| |||||||||||||||  ||| |||||||||||  ||||||||||||||||     ||||| ||      ||    
T  231695 gatgtgtttaagctcaatgcaaaggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttggggtccctatgttcattttctgctt 231596  T
Q  237 ctgcttctgctttagatttatgtgtttccaaagggaattgtgtgatctttattggtaatat 297  Q
    ||||||||||||| |||||||||||| | |||||||||||||| ||| |||| | ||||||    
T  231595 ctgcttctgctttggatttatgtgttccaaaagggaattgtgtcatcattatggataatat 231535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 194 - 290
Target Start/End: Complemental strand, 18991267 - 18991171
Alignment:
Q  194 ttaggggatagggttttgttcttggggt-tggagtgttcgttttctgcttctgctttagatttatgtgtttccaaagggaattgtgtgatctttattg 290  Q
    |||||| ||||||||||||||||||||  |||| ||||||||||||||||||||||  ||||||| ||||  |||||||||||||||  |||||||||    
T  18991267 ttagggaatagggttttgttcttggggaatgga-tgttcgttttctgcttctgcttctgatttatctgttgtcaaagggaattgtgtcgtctttattg 18991171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 290
Target Start/End: Complemental strand, 4428742 - 4428598
Alignment:
Q  146 gtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttggggt-tggagtgttcgttttctgcttct 244  Q
    ||||||| |||||||||||||| |   || |||||||| ||  | ||||| ||||||||||||||||| ||||||  |||| |||| ||||||||| |||    
T  4428742 gtgtttaggcttgatgagaaggcgcgtaaatgggtgaaattgacgagtttgggggatagggttttgtttttggggaatgga-tgtttgttttctgcctct 4428644  T
Q  245 gctttagatttatgtgtttccaaagggaattgtgtgatctttattg 290  Q
    ||||  || || | |||| | |||||||||||||| ||||||||||    
T  4428643 gcttctgagttgtctgttactaaagggaattgtgtcatctttattg 4428598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 4428840 - 4428784
Alignment:
Q  45 acaaaaaattcttagtcgagagagagggagagttgttgctagtggacatttatgagt 101  Q
    |||||||||||||||| ||||| |||||  ||||||||||||||| |||||||||||    
T  4428840 acaaaaaattcttagtggagagtgagggcaagttgttgctagtggtcatttatgagt 4428784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 437 - 485
Target Start/End: Original strand, 8814661 - 8814709
Alignment:
Q  437 gtatgttattttgcatcaaaaggtttctaatgtgattgtgatatagctt 485  Q
    ||||||||| ||||||  |||||||||||||||||||||||||||||||    
T  8814661 gtatgttatcttgcattgaaaggtttctaatgtgattgtgatatagctt 8814709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 489
Target Start/End: Complemental strand, 231405 - 231351
Alignment:
Q  435 aagtatgttattttgcatcaaaaggtttctaatgtgattgtgatatagctttatt 489  Q
    ||||||||||| ||||||  ||||||||||||||| | |||||||||||||||||    
T  231405 aagtatgttatcttgcattgaaaggtttctaatgtaactgtgatatagctttatt 231351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 436 - 489
Target Start/End: Complemental strand, 246697 - 246644
Alignment:
Q  436 agtatgttattttgcatcaaaaggtttctaatgtgattgtgatatagctttatt 489  Q
    ||||| |||| ||||||  ||||||||||||||||||| |||||||||||||||    
T  246697 agtatattatcttgcattgaaaggtttctaatgtgattttgatatagctttatt 246644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 488
Target Start/End: Complemental strand, 235043 - 234991
Alignment:
Q  436 agtatgttattttgcatcaaaaggtttctaatgtgattgtgatatagctttat 488  Q
    |||||||||| ||||||  ||||||||||||| |||||||||| |||||||||    
T  235043 agtatgttatcttgcattgaaaggtttctaatctgattgtgatgtagctttat 234991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 144 - 290
Target Start/End: Original strand, 20694304 - 20694450
Alignment:
Q  144 atgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttggggt-tggagtgttcgttttctgctt 242  Q
    ||||||| | ||||||||| ||||||||||| |||||||  ||  | ||||| ||||||||||||||||| ||||||  |||| ||||||||||||||||    
T  20694304 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatgga-tgttcgttttctgctt 20694402  T
Q  243 ctgctttagatttatgtgtttccaaagggaattgtgtgatctttattg 290  Q
    ||||||  ||||| |||||| |||||||||||||||| ||||||||||    
T  20694403 ctgcttcggatttgtgtgttgccaaagggaattgtgtcatctttattg 20694450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 135 - 288
Target Start/End: Complemental strand, 18571233 - 18571077
Alignment:
Q  135 taagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggata---gggttttgttcttggggttggagtgttc 231  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||||||| ||  | |||||||||||||     ||||||||||| ||  |||   ||||    
T  18571233 taaggattgatttctttaagcttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggatacagttgttttgttcttaggcatggcaggttc 18571134  T
Q  232 gttttctgcttctgctttagatttatgtgtttccaaagggaattgtgtgatctttat 288  Q
     ||||||  ||||||||  ||||| |||||||||||||||||||||||||| |||||    
T  18571133 tttttctatttctgcttcggatttgtgtgtttccaaagggaattgtgtgatttttat 18571077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 33541895 - 33541630
Alignment:
Q  14 ttagttgctgaacctttggttggtggcggggacaaaaaattcttagtcgagagagagggagagttgttgctagtggacatttatgagtgtttttgtttcg 113  Q
    ||||| |||||| ||||||||||||| || |||   ||||||||||| |||||  |||| || |||||| |||||||  ||||||| |||    || |||    
T  33541895 ttagtggctgaatctttggttggtggtggagacgtcaaattcttagtggagagcaagggtgatttgttgttagtggatgtttatgattgtacacgtatcg 33541796  T
Q  114 agttcccgggtcctgatgctataagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgtt 213  Q
      ||||| ||||   || || ||||| || || ||||||||||| |||||||||||| | ||||||||||||||   |||||||| ||||  ||||||||    
T  33541795 gcttccctggtcacaatcctgtaaggattcatttgtttaagcttaatgagaaggagacggagtgggtgaagttaaagagtttaggagatattgttttgtt 33541696  T
Q  214 cttggggttggagtgttcgttttctgcttctgctttagatttatgtgtttccaaagggaattgtgt 279  Q
    ||| |||   || ||||| |||||||| |||||||  ||||| |  ||| ||||||| ||||||||    
T  33541695 cttaggggctgactgttccttttctgcatctgcttctgatttgtccgttgccaaaggtaattgtgt 33541630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 32 - 285
Target Start/End: Original strand, 44688676 - 44688929
Alignment:
Q  32 gttggtggcggggacaaaaaattcttagtcgagagagagggagagttgttgctagtggacatttatgagtgtttttgtttcgagttcccgggtcctgatg 131  Q
    |||| ||| ||||||| ||||||| | || ||||| || || |||||||||||||||||||| ||||| | |  | |||| | ||||||||||   ||||    
T  44688676 gttgatggaggggacataaaattcctggtagagagtgaaggtgagttgttgctagtggacatctatgactctcatggttttgggttcccgggtgaagatg 44688775  T
Q  132 ctataagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagttatctagtttaggggatagggttttgttcttggggttggagtgttc 231  Q
     | || || |||||||||| | |||  |||||||| | ||||| ||||| |||||| | ||||||||| ||||  ||||||||||||||   || | |||    
T  44688776 gtctacggcttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattc 44688875  T
Q  232 gttttctgcttctgctttagatttatgtgtttccaaagggaattgtgtgatctt 285  Q
     |||||| || ||||||  ||||| | | || |||||||||||||||| |||||    
T  44688876 attttctactactgcttcggatttgtctattgccaaagggaattgtgtaatctt 44688929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 13170584 - 13170642
Alignment:
Q  41 ggggacaaaaaattcttagtcgagagagagggagagttgttgctagtggacatttatga 99  Q
    |||||||  |||||||| |||||||| ||||| |||||||||||||||||||| |||||    
T  13170584 ggggacatgaaattcttggtcgagagcgagggtgagttgttgctagtggacatctatga 13170642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 450111 - 450156
Alignment:
Q  141 ttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtt 186  Q
    |||||||||||| |||||||||||||||||| |||||||| |||||    
T  450111 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagtt 450156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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