View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8549_low_10 (Length: 354)

Name: NF8549_low_10
Description: NF8549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8549_low_10
NF8549_low_10
[»] chr7 (12 HSPs)
chr7 (18-345)||(21945640-21945967)
chr7 (139-192)||(34986038-34986091)
chr7 (139-201)||(9559138-9559200)
chr7 (126-195)||(8607957-8608026)
chr7 (138-201)||(7362496-7362559)
chr7 (154-193)||(32915903-32915942)
chr7 (154-189)||(33450450-33450485)
chr7 (154-189)||(47500379-47500414)
chr7 (155-193)||(8149565-8149603)
chr7 (139-201)||(21151081-21151143)
chr7 (127-201)||(27387012-27387086)
chr7 (152-189)||(6568424-6568461)
[»] chr8 (5 HSPs)
chr8 (126-262)||(24557358-24557497)
chr8 (127-201)||(21492700-21492775)
chr8 (126-234)||(1098442-1098551)
chr8 (129-189)||(5033025-5033085)
chr8 (139-189)||(45113199-45113249)
[»] chr5 (10 HSPs)
chr5 (127-266)||(38283706-38283846)
chr5 (128-266)||(23253758-23253899)
chr5 (141-189)||(23253724-23253772)
chr5 (143-189)||(38283832-38283878)
chr5 (154-260)||(2582370-2582478)
chr5 (126-195)||(29340913-29340982)
chr5 (155-190)||(10242777-10242812)
chr5 (139-189)||(32129713-32129763)
chr5 (129-201)||(11775711-11775783)
chr5 (130-198)||(39902335-39902403)
[»] chr3 (15 HSPs)
chr3 (128-266)||(20485687-20485828)
chr3 (126-201)||(54911780-54911855)
chr3 (139-189)||(20485814-20485864)
chr3 (127-264)||(28229410-28229545)
chr3 (154-189)||(48084763-48084798)
chr3 (141-194)||(32577463-32577516)
chr3 (139-257)||(33338186-33338306)
chr3 (126-264)||(48950536-48950677)
chr3 (127-181)||(550920-550974)
chr3 (128-198)||(778906-778976)
chr3 (139-201)||(34373669-34373731)
chr3 (139-201)||(40851702-40851764)
chr3 (305-338)||(19897279-19897312)
chr3 (129-198)||(43720034-43720103)
chr3 (153-201)||(27033594-27033642)
[»] chr2 (4 HSPs)
chr2 (126-193)||(38396999-38397066)
chr2 (154-264)||(41072957-41073070)
chr2 (127-198)||(30824095-30824166)
chr2 (282-334)||(5876170-5876222)
[»] chr4 (10 HSPs)
chr4 (154-201)||(26428587-26428634)
chr4 (127-192)||(38865206-38865271)
chr4 (129-201)||(23610561-23610633)
chr4 (154-189)||(31862316-31862351)
chr4 (139-189)||(5763258-5763308)
chr4 (139-201)||(12153100-12153162)
chr4 (155-189)||(46804585-46804619)
chr4 (153-201)||(3952254-3952302)
chr4 (153-201)||(12241492-12241540)
chr4 (155-187)||(56564675-56564707)
[»] chr6 (8 HSPs)
chr6 (154-189)||(227660-227695)
chr6 (139-189)||(4804377-4804427)
chr6 (155-193)||(28696732-28696770)
chr6 (151-189)||(31708289-31708327)
chr6 (139-189)||(32737803-32737853)
chr6 (154-187)||(13888611-13888644)
chr6 (129-201)||(1249230-1249302)
chr6 (153-201)||(7162027-7162075)
[»] chr1 (9 HSPs)
chr1 (139-201)||(7841794-7841856)
chr1 (139-201)||(12380994-12381056)
chr1 (139-201)||(12385061-12385123)
chr1 (282-324)||(14969677-14969719)
chr1 (154-192)||(18976395-18976433)
chr1 (139-201)||(45977951-45978013)
chr1 (139-201)||(50294147-50294209)
chr1 (139-191)||(1228622-1228674)
chr1 (129-201)||(50484305-50484377)


Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 21945967 - 21945640
Alignment:
Q  18 ctatctcctaataaagaaagacatagaccatgctgttaaaaagataccgacagaaaattagaaacttactaattagttttccaagtaaaagtaatactca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21945967 ctatctcctaataaagaaagacatagaccatgctgttaaaaagataccgacagaaaattagaaacttactaattagatttccaagtaaaagtaatactca 21945868  T
Q  118 ctctatttcgagttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaatattaatgatagtcag 217  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21945867 ctctatttcgagttaagatattctccatttaaatttttcttcatttctactatttggagagatatagacacaaaaattcttgaatattaatgatagtcag 21945768  T
Q  218 acctatttaatgatatggcccaccacctattttatgtgtctatatctctatttcacgatgaatatcgttttagcaaaaaatatttgctttaaaataaatg 317  Q
    | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21945767 atctatttaatgatatgacccaccacctattttatgtgtctatatctctatttcacgatgtatatcgttttagcaaaaaatatttgctttaaaataaatg 21945668  T
Q  318 ttattttcactttttaatgcagaataat 345  Q
    ||||||||||||||||||||||||||||    
T  21945667 ttattttcactttttaatgcagaataat 21945640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 34986091 - 34986038
Alignment:
Q  139 tctccatttaaatttttctccatttctaccatttggagagatatagacacaaaa 192  Q
    ||||||||||  | ||||||||||||||||||||||||||||||||||| ||||    
T  34986091 tctccatttatgtctttctccatttctaccatttggagagatatagacataaaa 34986038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 9559200 - 9559138
Alignment:
Q  139 tctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaa 201  Q
    |||||||||| || |||||| |||||| ||||||||||||||| ||||||| ||| |||||||    
T  9559200 tctccatttatatgtttctcgatttcttccatttggagagataaagacacataaaatcttgaa 9559138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 8607957 - 8608026
Alignment:
Q  126 cgagttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaatt 195  Q
    |||||||||||  |||||||||| |  ||||||||||| | ||||||||| ||||| |||||||||||||    
T  8607957 cgagttaagatcctctccatttataactttctccatttgttccatttggaaagatagagacacaaaaatt 8608026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 7362496 - 7362559
Alignment:
Q  138 ttctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaa 201  Q
    |||||||||||  | ||||||||||||| | ||||||||||||| ||||||| ||| |||||||    
T  7362496 ttctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatcttgaa 7362559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 32915903 - 32915942
Alignment:
Q  154 ttctccatttctaccatttggagagatatagacacaaaaa 193  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  32915903 ttctccatttcttccatttggagagataaagacacaaaaa 32915942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 189
Target Start/End: Original strand, 33450450 - 33450485
Alignment:
Q  154 ttctccatttctaccatttggagagatatagacaca 189  Q
    |||||||||||||||||||||||||||||| |||||    
T  33450450 ttctccatttctaccatttggagagatataaacaca 33450485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 189
Target Start/End: Complemental strand, 47500414 - 47500379
Alignment:
Q  154 ttctccatttctaccatttggagagatatagacaca 189  Q
    ||||||||||||||||||| ||||||||||||||||    
T  47500414 ttctccatttctaccatttagagagatatagacaca 47500379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 8149565 - 8149603
Alignment:
Q  155 tctccatttctaccatttggagagatatagacacaaaaa 193  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  8149565 tctctatttctaccatttggagagataaagacacaaaaa 8149603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 21151081 - 21151143
Alignment:
Q  139 tctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaa 201  Q
    ||||||||||  | ||||||||||||| | ||||||||||||| ||||||| ||| |||||||    
T  21151081 tctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatcttgaa 21151143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 27387086 - 27387012
Alignment:
Q  127 gagttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaa 201  Q
    ||||||||||  |||||||||||  | |||| ||||| | | ||||||| ||||||||||||||||| |||||||    
T  27387086 gagttaagatcctctccatttaatctcttcttcatttattcgatttggaaagatatagacacaaaaaatcttgaa 27387012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 6568461 - 6568424
Alignment:
Q  152 ttttctccatttctaccatttggagagatatagacaca 189  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  6568461 ttttatccatttctaccatttggagagataaagacaca 6568424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 126 - 262
Target Start/End: Original strand, 24557358 - 24557497
Alignment:
Q  126 cgagttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaa---tattaatgatagtcagaccta 222  Q
    |||||||||||  |||||||||||||||||  | ||||||||||||| |||| |||||||||||||||||||||||    ||||||||||||||||| ||    
T  24557358 cgagttaagatcctctccatttaaatttttgccaatttctaccatttagagatatatagacacaaaaattcttgaaaataattaatgatagtcagacgta 24557457  T
Q  223 tttaatgatatggcccaccacctattttatgtgtctatat 262  Q
    |||||||||||| |||| ||||||||||||||| ||||||    
T  24557458 tttaatgatatgacccatcacctattttatgtgcctatat 24557497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 21492700 - 21492775
Alignment:
Q  127 gagttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacaca-aaaattcttgaa 201  Q
    ||||| |||| ||||||||||||| | || ||||||||| ||||||||||||||| ||||||| |||| |||||||    
T  21492700 gagttgagatcttctccatttaaactcttttccatttcttccatttggagagataaagacacacaaaaatcttgaa 21492775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 1098551 - 1098442
Alignment:
Q  126 cgagttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaa---tattaatgatagtcagaccta 222  Q
    |||||||||||  ||||||||||| |||||   ||||||||||||||  | | ||||||||||||||| |||||||    ||||||| |||| |||||||    
T  1098551 cgagttaagatcatctccatttaattttttt--catttctaccatttcaaaaaatatagacacaaaaaatcttgaaaataattaatgctagtaagaccta 1098454  T
Q  223 tttaatgatatg 234  Q
    |||||| |||||    
T  1098453 tttaataatatg 1098442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 5033025 - 5033085
Alignment:
Q  129 gttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacaca 189  Q
    ||||||||  |||||||||| || ||||||||||||| | ||||||||||||| |||||||    
T  5033025 gttaagatcctctccatttatatgtttctccatttcttcaatttggagagataaagacaca 5033085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 45113199 - 45113249
Alignment:
Q  139 tctccatttaaatttttctccatttctaccatttggagagatatagacaca 189  Q
    |||||||||| ||  |||| ||||| |||||||||||||||||||||||||    
T  45113199 tctccatttatatccttcttcatttttaccatttggagagatatagacaca 45113249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 127 - 266
Target Start/End: Original strand, 38283706 - 38283846
Alignment:
Q  127 gagttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaatat---taatgatagtcagacctat 223  Q
    ||||||||||  ||||||||||||||||| || ||||||||||||| ||||||||||||||||||  ||||| || ||   ||||||||||||||| |||    
T  38283706 gagttaagatcctctccatttaaatttttatctatttctaccatttagagagatatagacacaaa--ttcttaaaaataattaatgatagtcagacttat 38283803  T
Q  224 ttaatgatatggcccaccacctattttatgtgtctatatctct 266  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  38283804 ttaatgatatgacccaccacctactttatgtgtctatatctct 38283846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 128 - 266
Target Start/End: Complemental strand, 23253899 - 23253758
Alignment:
Q  128 agttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaa---tattaatgatagtcagacctatt 224  Q
    |||||||||  |||||||||||||||| ||| |||| ||||||||||| |||||||||||||||| ||||||||    |||||||||||| | |||||||    
T  23253899 agttaagatcctctccatttaaattttcctctatttttaccatttggatagatatagacacaaaagttcttgaaaataattaatgatagtgaaacctatt 23253800  T
Q  225 taatgatatggcccaccacctattttatgtgtctatatctct 266  Q
    |||||| ||| ||||||||| ||||||||||||| |||||||    
T  23253799 taatgacatgacccaccacccattttatgtgtctctatctct 23253758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 23253724 - 23253772
Alignment:
Q  141 tccatttaaatttttctccatttctaccatttggagagatatagacaca 189  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23253724 tccatttaaatttttctccatttctaccatttggagagatagagacaca 23253772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 38283878 - 38283832
Alignment:
Q  143 catttaaatttttctccatttctaccatttggagagatatagacaca 189  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||    
T  38283878 catttaaatttttctccatttttacaatttggagagatatagacaca 38283832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 2582478 - 2582370
Alignment:
Q  154 ttctccatttctaccatttggagagatatagacacaaaaattcttgaa---tattaatgatagtcagacctatttaatgatatggcccaccacctatttt 250  Q
    ||||||||||||  ||||||| |||||||||||||||||| |||| ||    |||||||||  | |||  |||||||||||| | |||||||||||||||    
T  2582478 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacctatttt 2582379  T
Q  251 atgtgtctat 260  Q
     |||||||||    
T  2582378 -tgtgtctat 2582370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 29340913 - 29340982
Alignment:
Q  126 cgagttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaatt 195  Q
    ||||||||||| |||||||||||   || ||||||||||   |||||||||||||||||| |||||||||    
T  29340913 cgagttaagatcttctccatttattattctctccatttcattcatttggagagatatagagacaaaaatt 29340982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 10242777 - 10242812
Alignment:
Q  155 tctccatttctaccatttggagagatatagacacaa 190  Q
    ||||||||||||||||||||||||||| ||||||||    
T  10242777 tctccatttctaccatttggagagataaagacacaa 10242812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 32129763 - 32129713
Alignment:
Q  139 tctccatttaaatttttctccatttctaccatttggagagatatagacaca 189  Q
    |||||||||| || ||||||||||||| | ||||||||||||| |||||||    
T  32129763 tctccatttatatgtttctccatttcttcaatttggagagataaagacaca 32129713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 11775711 - 11775783
Alignment:
Q  129 gttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaa 201  Q
    ||||||||  ||||||||||  | ||||||||||||| | ||||||||||||| | ||||| ||| |||||||    
T  11775711 gttaagatcctctccatttatgtgtttctccatttcttcaatttggagagataaaaacacataaaatcttgaa 11775783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 39902335 - 39902403
Alignment:
Q  130 ttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattctt 198  Q
    |||||||  ||||||||||  | ||||||||||||| | ||||||||||||| ||||||| ||| ||||    
T  39902335 ttaagatcctctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatctt 39902403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 128 - 266
Target Start/End: Original strand, 20485687 - 20485828
Alignment:
Q  128 agttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaa---tattaatgatagtcagacctatt 224  Q
    |||||||||  |||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||| |||    |||||||||||| | |||||||    
T  20485687 agttaagatcctctccatttaaattttcctccatttttaccatttggagagatatagacacaaaagttctagaaaataattaatgatagtgaaacctatt 20485786  T
Q  225 taatgatatggcccaccacctattttatgtgtctatatctct 266  Q
    |||||| | | ||||||||| ||||||||||| |||||||||    
T  20485787 taatgacacgacccaccacccattttatgtgtttatatctct 20485828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 54911780 - 54911855
Alignment:
Q  126 cgagttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaa 201  Q
    |||||||||||  ||||||||| ||||||| ||||||||||||||||| ||| ||||| |||||||||||||||||    
T  54911780 cgagttaagattctctccattttaatttttgtccatttctaccatttgaagatatataaacacaaaaattcttgaa 54911855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 20485864 - 20485814
Alignment:
Q  139 tctccatttaaatttttctccatttctaccatttggagagatatagacaca 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20485864 tctccatttaaatttttctccatttctaccatttggagagatataaacaca 20485814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 264
Target Start/End: Complemental strand, 28229545 - 28229410
Alignment:
Q  127 gagttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaatattaatgatagtcagacctattta 226  Q
    ||||||||||  |||||||||||  | || ||||||||| |||||| ||||||||||||||||||||      || ||||||||| || ||||  |||||    
T  28229545 gagttaagatcctctccatttaatctcttgtccatttcttccatttagagagatatagacacaaaaa--aaaaaaaattaatgatggtgagactcattta 28229448  T
Q  227 atgatatggcccaccacctattttatgtgtctatatct 264  Q
    |||||| | | ||||||||||||| |||||||||||||    
T  28229447 atgataggactcaccacctattttttgtgtctatatct 28229410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 189
Target Start/End: Original strand, 48084763 - 48084798
Alignment:
Q  154 ttctccatttctaccatttggagagatatagacaca 189  Q
    ||||||||||||||||||||||||||||||||||||    
T  48084763 ttctccatttctaccatttggagagatatagacaca 48084798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 32577463 - 32577516
Alignment:
Q  141 tccatttaaatttttctccatttctaccatttggagagatatagacacaaaaat 194  Q
    |||||||||| | |||||||||||| | ||||||||||||| ||||||||||||    
T  32577463 tccatttaaactcttctccatttcttctatttggagagataaagacacaaaaat 32577516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 257
Target Start/End: Complemental strand, 33338306 - 33338186
Alignment:
Q  139 tctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaatat---taatgatagtcagacctatttaatgatatgg 235  Q
    |||||||||||| | || ||||||||| || |||| ||||||| |||||||||||| |||||| ||   |||||||  | ||||  ||||||||||| |     
T  33338306 tctccatttaaactcttttccatttcttccgtttgaagagataaagacacaaaaat-cttgaaaatagttaatgatgatgagactcatttaatgatagga 33338208  T
Q  236 cccaccacctattttatgtgtc 257  Q
    |||||| |||||||| ||||||    
T  33338207 cccacctcctattttgtgtgtc 33338186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 264
Target Start/End: Original strand, 48950536 - 48950677
Alignment:
Q  126 cgagttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaatat---taatgatagtcagaccta 222  Q
    |||||| ||||  |||||||||||| | ||||| |||||  ||||||  | ||||| | | ||||||| ||||||| ||   ||||||| || ||||  |    
T  48950536 cgagttgagatcctctccatttaaactcttctctatttcatccatttacaaagataaaaatacaaaaaatcttgaaaataattaatgatggtgagactca 48950635  T
Q  223 tttaatgatatggcccaccacctattttatgtgtctatatct 264  Q
    |||||||||| |  |||||||||||||||||||||| |||||    
T  48950636 tttaatgataggatccaccacctattttatgtgtctttatct 48950677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 550974 - 550920
Alignment:
Q  127 gagttaagatattctccatttaaatttttctccatttctaccatttggagagata 181  Q
    ||||||||||  ||||||||||  | ||||||||||||| |||||||||||||||    
T  550974 gagttaagatcctctccatttatgtctttctccatttcttccatttggagagata 550920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 778976 - 778906
Alignment:
Q  128 agttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattctt 198  Q
    |||||||||  |||||||||||| |||||||  ||||| ||||||| ||||||| ||| ||||||| ||||    
T  778976 agttaagatcctctccatttaaacttttctctctttcttccatttgtagagataaagaaacaaaaaatctt 778906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 34373731 - 34373669
Alignment:
Q  139 tctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaa 201  Q
    ||||||||||  | ||||||||||||| | ||||||||||||| ||| ||||||| |||||||    
T  34373731 tctccatttatgtgtttctccatttcttcaatttggagagataaagagacaaaaaatcttgaa 34373669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 40851702 - 40851764
Alignment:
Q  139 tctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaa 201  Q
    ||||||||||  | ||||||||||||| | ||||||||||||| ||||||| ||| |||||||    
T  40851702 tctccatttatgtatttctccatttcttcaatttggagagataaagacacataaaatcttgaa 40851764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 338
Target Start/End: Original strand, 19897279 - 19897312
Alignment:
Q  305 tttaaaataaatgttattttcactttttaatgca 338  Q
    ||||||||||||||||||||||||||| ||||||    
T  19897279 tttaaaataaatgttattttcacttttcaatgca 19897312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 43720103 - 43720034
Alignment:
Q  129 gttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattctt 198  Q
    |||| ||| |||||||||||  | ||||||||||||| | ||||||||||||| ||||||| ||| ||||    
T  43720103 gttaggatcttctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatctt 43720034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 27033594 - 27033642
Alignment:
Q  153 tttctccatttctaccatttggagagatatagacacaaaaattcttgaa 201  Q
    ||||||||||||| | ||||||||||||| ||||||| ||| |||||||    
T  27033594 tttctccatttcttcaatttggagagataaagacacataaaatcttgaa 27033642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 38396999 - 38397066
Alignment:
Q  126 cgagttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaa 193  Q
    |||||||||||||||||||||||  ||| ||||||||||  | ||||||||||||||||||| |||||    
T  38396999 cgagttaagatattctccatttatttttctctccatttcatcaatttggagagatatagacaaaaaaa 38397066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 41073070 - 41072957
Alignment:
Q  154 ttctccatttctaccatttggagagatatagacacaaaaattcttgaatat---taatgatagtcagacctatttaatgatatggcccaccacctatttt 250  Q
    ||||||||||||  ||||| |||||||| ||||||||||| |||| || ||   ||||||| || ||| | ||||||||||| | ||||||| |||||||    
T  41073070 ttctccatttctttcatttagagagataaagacacaaaaaatcttaaaaataattaatgattgtgagatccatttaatgataggacccaccaactatttt 41072971  T
Q  251 atgtgtctatatct 264  Q
    || |||||||||||    
T  41072970 atatgtctatatct 41072957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 30824095 - 30824166
Alignment:
Q  127 gagttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattctt 198  Q
    ||||||||||  | |||||||||  | |||||||||||| |||||| |||||||||||||||||||| ||||    
T  30824095 gagttaagatcctttccatttaatctcttctccatttcttccatttagagagatatagacacaaaaaatctt 30824166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 5876222 - 5876170
Alignment:
Q  282 tcgttttagcaaaaaatatttgctttaaaataaatgttattttcactttttaa 334  Q
    |||||||| |||||| |||||  ||||||||||||||  ||||||||||||||    
T  5876222 tcgttttaacaaaaattatttattttaaaataaatgtcgttttcactttttaa 5876170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 26428587 - 26428634
Alignment:
Q  154 ttctccatttctaccatttggagagatatagacacaaaaattcttgaa 201  Q
    |||||||||||||| ||||||||||||||||||||| ||||| |||||    
T  26428587 ttctccatttctacaatttggagagatatagacacacaaatttttgaa 26428634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 38865206 - 38865271
Alignment:
Q  127 gagttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacacaaaa 192  Q
    ||||||||||  |||||||||||  | |||||||||| |  |||||||||||||||||||||||||    
T  38865206 gagttaagatcatctccatttaatctcttctccatttatttcatttggagagatatagacacaaaa 38865271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 23610561 - 23610633
Alignment:
Q  129 gttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaa 201  Q
    ||||||||  |||||||||| || ||||||||||||| | ||||||||||||| ||| ||| ||| |||||||    
T  23610561 gttaagatcctctccatttatatgtttctccatttcttcaatttggagagataaagatacataaaatcttgaa 23610633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 189
Target Start/End: Complemental strand, 31862351 - 31862316
Alignment:
Q  154 ttctccatttctaccatttggagagatatagacaca 189  Q
    ||||| ||||||||||||||||||||||||||||||    
T  31862351 ttctctatttctaccatttggagagatatagacaca 31862316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 5763308 - 5763258
Alignment:
Q  139 tctccatttaaatttttctccatttctaccatttggagagatatagacaca 189  Q
    |||||||||| || ||||||||||||| | ||||||||||||| |||||||    
T  5763308 tctccatttatatgtttctccatttcttcaatttggagagataaagacaca 5763258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 12153100 - 12153162
Alignment:
Q  139 tctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaa 201  Q
    ||||||||||  | ||||||||||||| | ||||||||||||| ||||||| ||| |||||||    
T  12153100 tctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatcttgaa 12153162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 46804585 - 46804619
Alignment:
Q  155 tctccatttctaccatttggagagatatagacaca 189  Q
    ||||||||||||||||||||||||||| |||||||    
T  46804585 tctccatttctaccatttggagagataaagacaca 46804619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 3952302 - 3952254
Alignment:
Q  153 tttctccatttctaccatttggagagatatagacacaaaaattcttgaa 201  Q
    ||||||||||||| | ||||||||||||| ||||||| ||| |||||||    
T  3952302 tttctccatttcttcaatttggagagataaagacacataaaatcttgaa 3952254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 12241540 - 12241492
Alignment:
Q  153 tttctccatttctaccatttggagagatatagacacaaaaattcttgaa 201  Q
    ||||||||||||| | ||||||||||||| ||||||| ||| |||||||    
T  12241540 tttctccatttcttcaatttggagagataaagacacataaaatcttgaa 12241492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 56564675 - 56564707
Alignment:
Q  155 tctccatttctaccatttggagagatatagaca 187  Q
    ||||||||||||||||||||||||||| |||||    
T  56564675 tctccatttctaccatttggagagataaagaca 56564707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 189
Target Start/End: Complemental strand, 227695 - 227660
Alignment:
Q  154 ttctccatttctaccatttggagagatatagacaca 189  Q
    |||||||||||||| |||||||||||||||||||||    
T  227695 ttctccatttctacaatttggagagatatagacaca 227660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 4804377 - 4804427
Alignment:
Q  139 tctccatttaaatttttctccatttctaccatttggagagatatagacaca 189  Q
    |||||||||| || ||||||||||||| | ||||||||||||| |||||||    
T  4804377 tctccatttatatgtttctccatttcttcaatttggagagataaagacaca 4804427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 28696770 - 28696732
Alignment:
Q  155 tctccatttctaccatttggagagatatagacacaaaaa 193  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  28696770 tctccatttctatcatttggagagataaagacacaaaaa 28696732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 31708327 - 31708289
Alignment:
Q  151 tttttctccatttctaccatttggagagatatagacaca 189  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  31708327 tttttctccatttctatcatttgaagagatatagacaca 31708289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 32737803 - 32737853
Alignment:
Q  139 tctccatttaaatttttctccatttctaccatttggagagatatagacaca 189  Q
    |||||||||| || ||||||||||||| | ||||||||||||| |||||||    
T  32737803 tctccatttatatgtttctccatttcttcaatttggagagataaagacaca 32737853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 13888644 - 13888611
Alignment:
Q  154 ttctccatttctaccatttggagagatatagaca 187  Q
    |||| |||||||||||||||||||||||||||||    
T  13888644 ttcttcatttctaccatttggagagatatagaca 13888611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 1249302 - 1249230
Alignment:
Q  129 gttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaa 201  Q
    ||||||||  ||||||||||  | ||||||||||||| | ||||||| ||||| ||||||| ||| |||||||    
T  1249302 gttaagatcctctccatttatgtgtttctccatttcttcaatttggaaagataaagacacataaaatcttgaa 1249230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 7162027 - 7162075
Alignment:
Q  153 tttctccatttctaccatttggagagatatagacacaaaaattcttgaa 201  Q
    ||||||||||||| | ||||||||||||| ||||||| ||| |||||||    
T  7162027 tttctccatttcttcaatttggagagataaagacacataaaatcttgaa 7162075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 7841856 - 7841794
Alignment:
Q  139 tctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaa 201  Q
    |||||||||| || ||| ||||||||| | ||||||||||||| ||||||| ||| |||||||    
T  7841856 tctccatttatatgtttttccatttcttcaatttggagagataaagacacataaaatcttgaa 7841794  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 12381056 - 12380994
Alignment:
Q  139 tctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaa 201  Q
    ||||||||||  | ||||||||||||| | ||||||||||||| ||||||| ||| |||||||    
T  12381056 tctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatcttgaa 12380994  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 12385123 - 12385061
Alignment:
Q  139 tctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaa 201  Q
    ||||||||||  | ||||||||||||| | ||||||||||||| ||||||| ||| |||||||    
T  12385123 tctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatcttgaa 12385061  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 324
Target Start/End: Original strand, 14969677 - 14969719
Alignment:
Q  282 tcgttttagcaaaaaatatttgctttaaaataaatgttatttt 324  Q
    |||||||||||||||||||||  |||||||||||||| |||||    
T  14969677 tcgttttagcaaaaaatatttattttaaaataaatgtcatttt 14969719  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 18976433 - 18976395
Alignment:
Q  154 ttctccatttctaccatttggagagatatagacacaaaa 192  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  18976433 ttcttcatttctaccatttggagagatataaacacaaaa 18976395  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 45977951 - 45978013
Alignment:
Q  139 tctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaa 201  Q
    ||||||||||  | ||||||||||||| | ||||||||||||| ||||||| ||| |||||||    
T  45977951 tctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatcttgaa 45978013  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 50294209 - 50294147
Alignment:
Q  139 tctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaa 201  Q
    ||||||||||  | |||||| |||||| ||||||||||||||| ||||||| ||| |||||||    
T  50294209 tctccatttacgtgtttctcaatttcttccatttggagagataaagacacataaaatcttgaa 50294147  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 1228674 - 1228622
Alignment:
Q  139 tctccatttaaatttttctccatttctaccatttggagagatatagacacaaa 191  Q
    ||||||||||  || ||||||||||||||| |||| | |||||||||||||||    
T  1228674 tctccatttacgttcttctccatttctaccctttgaatagatatagacacaaa 1228622  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 50484305 - 50484377
Alignment:
Q  129 gttaagatattctccatttaaatttttctccatttctaccatttggagagatatagacacaaaaattcttgaa 201  Q
    ||||||||  ||||||||||  | |||||||||||||   ||||||||||||| ||||||| ||| |||||||    
T  50484305 gttaagatcctctccatttatgtgtttctccatttctttaatttggagagataaagacacataaaatcttgaa 50484377  T

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