View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8549_low_11 (Length: 354)
Name: NF8549_low_11
Description: NF8549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8549_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 45273054 - 45273396
Alignment:
| Q |
1 |
tacatttttctaggtcgtgatctttgcttcctttatgctcctcctccttaattccacattcagaaacaggcaatggagcgacttgagagagtttttctac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45273054 |
tacatttttctaggtcgtgatctttgcttcctttatgctcctcctcctcaattccacattcagaaacaggcaatggagcgacttgagagagtttttctac |
45273153 |
T |
|
| Q |
101 |
ggacacagcatgtactgttgttttctcctcttcatgctgttgagtttcttccaaaacttcatttacattagaagacggatcatcattatttccggcatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45273154 |
ggacacagcatgtactgttgttttctcctcttcatgctgttgagtttcttccaaaacttcatttacattagaagacggatcatcattatttccggcatca |
45273253 |
T |
|
| Q |
201 |
tcttttagaagctccttcttggagacagcgccatctcttcgtgcattcctacgttttctaaactcttcaatacgttgtcgaagaagaggacgaagtcttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45273254 |
tcttttagaagctccttcttggagacagcgccatctcttcgtgcattcctacgttttctaaactcttcaatacgttgtcgaagaagaggacgaagtcttg |
45273353 |
T |
|
| Q |
301 |
caggcaatacatcttctccatttggattaaccgacctagaatt |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45273354 |
caggcaatacatcttctccatttggattaaccgatctagaatt |
45273396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 45271587 - 45271645
Alignment:
| Q |
242 |
tgcattcctacgttttctaaactcttcaatacgttgtcgaagaagaggacgaagtcttg |
300 |
Q |
| |
|
||||||||||||||||||||||||||| ||| | | |||||||| | |||||||||||| |
|
|
| T |
45271587 |
tgcattcctacgttttctaaactcttcgatatgatatcgaagaatacgacgaagtcttg |
45271645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University