View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8549_low_15 (Length: 310)
Name: NF8549_low_15
Description: NF8549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8549_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 12139189 - 12139018
Alignment:
| Q |
25 |
ggtgaggtttcacatgtggacgattgattcttttcctaccatgggaaatgtggttttttacctgtaatagccagttaaacaggttgtcattagttttgtt |
124 |
Q |
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| T |
12139189 |
ggtgaggtttcacatg-ggaagattgattcttttcccaccatgggaaaggtgattttttacctgcaatagccagtcaaacaggttgccattggttttgtt |
12139091 |
T |
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| Q |
125 |
tggaattgcagttgagacaaaaaatgattaatgacttattatattatactgtgaactacacctcctcattctt |
197 |
Q |
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| T |
12139090 |
tggaattgcagttgagacaaaaaatgattaatgacttattatattatattgtgaactacacctccccattctt |
12139018 |
T |
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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 12138973 - 12138912
Alignment:
| Q |
242 |
ggttagcgactccattcttctctcctc-ttgttcttcaactcatcgccactctattcttctc |
302 |
Q |
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| T |
12138973 |
ggttagccactccattcttctctcctccttgttcttcaactcatcgccactccattcttctc |
12138912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 285
Target Start/End: Complemental strand, 12138925 - 12138889
Alignment:
| Q |
250 |
actccattcttctctcct-cttgttcttcaactcatc |
285 |
Q |
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| T |
12138925 |
actccattcttctctcctccttgttcttcaactcatc |
12138889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 57 - 189
Target Start/End: Original strand, 41466244 - 41466376
Alignment:
| Q |
57 |
ttcctaccatgggaaatgtggttttttacctgtaatagccagttaaacaggttgtcattagttttgtttggaattgcagttgagacaaaaaatgattaat |
156 |
Q |
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| T |
41466244 |
ttcccaccatgggaaaggtggttttttacctgcaatagccagtcaaacaggttgccattggttttgtttggaattgcagctgagacaaaaaatgattaat |
41466343 |
T |
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| Q |
157 |
gacttattatattatactgtgaactacacctcc |
189 |
Q |
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| T |
41466344 |
aacttattatattatattgtgaactacacctcc |
41466376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 57 - 189
Target Start/End: Original strand, 45320487 - 45320619
Alignment:
| Q |
57 |
ttcctaccatgggaaatgtggttttttacctgtaatagccagttaaacaggttgtcattagttttgtttggaattgcagttgagacaaaaaatgattaat |
156 |
Q |
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| T |
45320487 |
ttcccaccatgggaaatgtgcttttttacctgcaatagcctgtcaaacaagttgccattggttttgtttggaattgaagctgagacaaaaaatgattaat |
45320586 |
T |
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| Q |
157 |
gacttattatattatactgtgaactacacctcc |
189 |
Q |
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| T |
45320587 |
gacttattatattatattgtgaaccacacctcc |
45320619 |
T |
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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 65 - 165
Target Start/End: Complemental strand, 34826727 - 34826626
Alignment:
| Q |
65 |
atgggaaatgtggttttttacctgtaatagccagttaaacaggttgtcattagttttgtttggaattgcagttgagacaa-aaaatgattaatgacttat |
163 |
Q |
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| T |
34826727 |
atgggaaatgtggttttttacctgcaatagcaagttaaacaggttgtcattggttttgtttggaattgcacttgagacaaaaaaatgattaatgacttat |
34826628 |
T |
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| Q |
164 |
ta |
165 |
Q |
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|| |
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| T |
34826627 |
ta |
34826626 |
T |
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Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 57 - 165
Target Start/End: Original strand, 26520894 - 26521004
Alignment:
| Q |
57 |
ttcctaccatgggaaatgtggttttttacctgtaatagccagttaaacaggttgtcattagttttgtttggaattgcagttgagac-aaaaaatgattaa |
155 |
Q |
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|||| ||||||||||||||||||||||||||| |||||| ||| |||||||||| |||| |||||||||||||||||| ||||||| ||||||||||||| |
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| T |
26520894 |
ttcccaccatgggaaatgtggttttttacctgcaatagcaagtcaaacaggttgccattggttttgtttggaattgcacttgagacaaaaaaatgattaa |
26520993 |
T |
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| Q |
156 |
t-gacttatta |
165 |
Q |
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| T |
26520994 |
tggacttatta |
26521004 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 3230144 - 3230096
Alignment:
| Q |
62 |
accatgggaaatgtggttttttacctgtaatagccagttaaacaggttg |
110 |
Q |
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| T |
3230144 |
accatgggaaaggtggttttttacctgcaatagcaagtcaaacaggttg |
3230096 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 29059268 - 29059357
Alignment:
| Q |
101 |
aaacaggttgtcattagttttgtttggaattgcagttgagacaaaaaatgattaa-tgacttattatattatactgtgaactacacctcc |
189 |
Q |
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| T |
29059268 |
aaacatgttgacattggttttgtttggtatttcacttcagccaaaaaatcattaaataacttattatactaaattgtgaactacacctcc |
29059357 |
T |
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